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(-) Description

Title :  INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE FROM VIBRIO CHOLERAE, DELETION MUTANT
 
Authors :  J. Osipiuk, N. Maltseva, M. Makowska-Grzyska, M. Gu, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious D (Csgid)
Date :  30 May 12  (Deposition) - 13 Jun 12  (Release) - 13 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (4x)
Biol. Unit 2:  B  (4x)
Biol. Unit 3:  A,B  (4x)
Keywords :  Structural Genomics, Impdh, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, N. Maltseva, M. Makowska-Grzyska, M. Gu, W. F. Anderson, A. Joachimiak
Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae Deletion Mutant.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE
    Chains: A, B
    EC Number: 1.1.1.205
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VC0767, VC_0767
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR EL TOR
    Organism Taxid: 243277
    Strain: N16961

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (4x): A 
Biological Unit 2 (4x):  B
Biological Unit 3 (4x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2FMT6Ligand/IonFORMIC ACID
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2FMT8Ligand/IonFORMIC ACID
3PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2FMT16Ligand/IonFORMIC ACID
3PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (3, 40)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2FMT24Ligand/IonFORMIC ACID
3PEG8Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:227 , ALA A:228 , ALA A:229 , ASN A:232 , GLU A:233 , VAL A:236 , ARG A:262 , THR A:266 , HOH A:661 , HOH A:700 , HOH A:756BINDING SITE FOR RESIDUE PEG A 501
02AC2SOFTWAREALA A:269 , GLU A:332BINDING SITE FOR RESIDUE EDO A 502
03AC3SOFTWARELYS A:38 , ARG A:267 , GLY A:293 , VAL A:294 , HOH A:792 , HOH A:811BINDING SITE FOR RESIDUE EDO A 503
04AC4SOFTWAREGLY A:227 , ALA A:228 , ALA A:229 , ASN A:232BINDING SITE FOR RESIDUE FMT A 504
05AC5SOFTWAREGLY A:302 , THR A:309 , HOH A:719 , HOH A:723 , HOH A:763BINDING SITE FOR RESIDUE FMT A 505
06AC6SOFTWAREGLU A:370 , HIS A:428 , HOH A:657 , GLU B:370 , VAL B:376 , HIS B:428BINDING SITE FOR RESIDUE PEG B 501
07AC7SOFTWAREGLY B:227 , ALA B:229 , ASN B:232 , ARG B:262 , HOH B:630 , HOH B:664BINDING SITE FOR RESIDUE FMT B 502
08AC8SOFTWARESER B:23 , SER B:256 , GLU B:257 , GLY B:258BINDING SITE FOR RESIDUE FMT B 503
09AC9SOFTWAREALA B:268 , ARG B:287 , GLU B:291BINDING SITE FOR RESIDUE FMT B 504
10BC1SOFTWAREGLY B:302 , THR B:309BINDING SITE FOR RESIDUE FMT B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FEZ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:278 -Asn A:279
2Gly B:278 -Asn B:279

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FEZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FEZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4FEZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4feza1 A:3-89,A:208-467 automated matches                                             ---d4feza1 A:3-89,A:208-467 automated matches                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eee.......hhhhh...eeee..eee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhh.................eeee.....hhhhhhhhhhh...eeee......hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh..eeee.......hhhhhhhh...hhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhh...eeee............eeeee..eeeee..ee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fez A   3 MLRIAKEALTFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQVKIFESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTKAQFVRISGA 467
                                    12        22        32        42        52        62        72        82        92|      217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387|      431       441       451       461      
                                                                                                                    92|                                                                                                                                                                                387|                                             
                                                                                                                    208                                                                                                                                                                                 422                                             


Chain B from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4fezb1 B:4-89,B:208-467 automated matches                                            ---d4fezb1 B:4-89,B:208-467 automated matches                                                                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhh.eee.......hhhhh...eeee..eee...eee.......hhhhhhhhhhhh.eeee....hhhhhhhhhhhhhh.................eeee.....hhhhhhhhhhh...eeee......hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh..eeee.......hhhhhhhh...hhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhh...eeee............eeeee..eeeee...ee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fez B   4 LRIAKEALTFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQVKIFESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTKAQFVRISGA 467
                                    13        23        33        43        53        63        73        83       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       421       431       441       451       461      
                                                                                                                   92|                                                                                                                                                                                387|                                              
                                                                                                                   208                                                                                                                                                                                 421
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FEZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FEZ)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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        Q9KTW3_VIBCH | Q9KTW3: 4fo4 4fxs 4ix2 4qne 4qq3 4x3z

(-) Related Entries Specified in the PDB File

4ff0 RELATED ID: CSGID-IDP04364 RELATED DB: TARGETTRACK