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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE DIFLAVIN FLAVOPROTEIN A 5 (FRAGMENT 1-254) FROM NOSTOC SP. PCC 7120, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET NSR435A , NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET NSR435A
 
Authors :  A. Kuzin, M. Abashidze, J. Seetharaman, J. Janjua, R. Xiao, E. L. Foote, C. Ciccosanti, H. Wang, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomic Consortium (Nesg)
Date :  30 May 12  (Deposition) - 11 Jul 12  (Release) - 11 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Dfa5, All0177, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kuzin, M. Abashidze, J. Seetharaman, J. Janjua, R. Xiao, E. L. Foote C. Ciccosanti, H. Wang, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Northeast Structural Genomics Consortium Target Nsr435A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE DIFLAVIN FLAVOPROTEIN A 5
    Chains: A, B
    EC Number: 1.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3) + MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: DFA5, ALL0177
    Organism Scientific: NOSTOC SP. PCC 7120
    Organism Taxid: 103690

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
4PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4PO41Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:151 , PRO A:152 , SER A:153 , TRP A:156 , ILE A:175 , HIS A:211 , ALA A:215 , LYS A:218 , HOH A:420BINDING SITE FOR RESIDUE PEG A 301
2AC2SOFTWAREPHE A:88 , TRP A:156 , ALA A:158 , HOH A:440BINDING SITE FOR RESIDUE CL A 302
3AC3SOFTWAREVAL A:60 , HIS A:87 , SER A:89 , ASN A:91 , ARG A:92 , LYS A:174 , HOH A:418 , HOH A:423 , HOH A:458BINDING SITE FOR RESIDUE PO4 A 303
4AC4SOFTWAREILE B:151 , PRO B:152 , SER B:153 , ILE B:175 , HIS B:211 , ALA B:215 , LYS B:218BINDING SITE FOR RESIDUE PEG B 301
5AC5SOFTWAREVAL B:60 , HIS B:87 , SER B:89 , ASN B:91 , ARG B:92 , LYS B:174BINDING SITE FOR RESIDUE PO4 B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FEK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FEK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FEK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FEK)

(-) Exons   (0, 0)

(no "Exon" information available for 4FEK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee..eeeeeeee......hhhhh....eeeeeeeee...eeee...hhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhh......eeee.....ee.....eeeeee.........eeeee....eeeee................hhhhhhhhhhhhh..hhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fek A   5 KPRDVQVLPIATNTKVLRARSWSRLRFEIEYALERGTTSNSYVIEGDKTAIIDPPVESFmKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAPQITFVCSLPAAGDLRAAFPDDNLNILPmRGKETLDLGKGHVLKFLPIPSPRWPAGLCTYDVQTQILYTDKIFGAHICGDDVFDESFKEDQRYYFNCLmAPHAIHVEAALEKISDLQVRLYAVGHGPLVRTSLIALTQAYADWSKAQKLEHHH 259
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184  ||   197       207       217       227       237       247       257  
                                                                                      64-MSE                                                             132-MSE                                                187|           205-MSE                                                  
                                                                                                                                                                                                                 191                                                                    


Chain B from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..eeeeeeee......hhhhh....eeeeeeeee...eeee...hhhhhhhhhhhhhhhhhhhhh.eee....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhh....eeee....ee.....eeeeee.........eeeee....eeeee...................hhhhhhhhhhhhh..hhhhhhhhhhhh......eeee........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fek B   5 KPRDVQVLPIATNTKVLRARSWSRLRFEIEYALERGTTSNSYVIEGDKTAIIDPPVESFmKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAPQITFVCSLPAAGDLRAADNLNILPmRGKTLDLGKGHVLKFLPIPSPRWPAGLCTYDVQTQILYTDKIFGAHICGDDVFDDNWESFKEDQRYYFNCLmAPHAIHVEAALEKISDLQVRLYAVGHGPLVRTSLIALTQAYADWSKAQKLE 256
                                    14        24        34        44        54        64        74        84        94       104       114      |127    |  138       148       158       168       178       188       198      |208       218       228       238       248        
                                                                                      64-MSE                                                  121|      |  ||                                                                 205-MSE                                               
                                                                                                                                               125      |  ||                                                                                                                       
                                                                                                                                                      132-MSE                                                                                                                       
                                                                                                                                                         135|                                                                                                                       
                                                                                                                                                          137
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FEK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FEK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FEK)

(-) Gene Ontology  (4, 4)

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3hnn TO BE OBSOLETE RELATED ID: NESG-NSR435A RELATED DB: TARGETTRACK