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(-) Description

Title :  CRYSTAL STRUCTURE OF THE NTF2-LIKE DOMAIN OF HUMAN G3BP1 IN COMPLEX WITH A PEPTIDE
 
Authors :  T. Vognsen, O. Kristensen
Date :  25 May 12  (Deposition) - 05 Jun 13  (Release) - 18 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Ntf2-Like Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Vognsen, I. R. Mller, O. Kristensen
Crystal Structures Of The Human G3Bp1 Ntf2-Like Domain Visualize Fxfg Nup Repeat Specificity.
Plos One V. 8 80947 2013
PubMed-ID: 24324649  |  Reference-DOI: 10.1371/JOURNAL.PONE.0080947

(-) Compounds

Molecule 1 - RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1
    Chains: A, B
    EC Number: 3.6.4.12, 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: NTF2-LIKE DOMAIN
    Gene: G3BP1, G3BP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: G3BP-1, ATP-DEPENDENT DNA HELICASE VIII, HDH VIII, GAP SH3 DOMAIN-BINDING PROTEIN 1
 
Molecule 2 - NUCLEOPORIN REPEAT PEPTIDE
    Chains: C, D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:106 , ARG A:107 , ASP A:135 , HOH A:302 , HOH A:322BINDING SITE FOR RESIDUE PO4 A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FCM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu B:45 -Asp B:46

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FCM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FCM)

(-) Exons   (0, 0)

(no "Exon" information available for 4FCM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains d4fcma_ A: automated matches                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee............eehhhhhhhhhhhh.....eeeeeeeeeee.....eeeeeeeeee......eeeeeeeeeee......eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fcm A   7 SPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 138
                                    16        26        36        46        56        66        76        86        96       106       116       126       136  


Chain B from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains d4fcmb_ B: automated matches                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..........eehhhhhhhhhhh......eeeeeeeeeeee...eeeeeeeeeee......eeeeeeeeeee.......eeeeeeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fcm B   1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 138
                                    10        20        30        40     || 53        63        73        83        93       103       113       123       133     
                                                                        46|                                                                                        
                                                                         50                                                                                        


Chain C from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 4fcm C   2 SGFSF   6


Chain D from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 4fcm D   2 SGFSF   6
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FCM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FCM)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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    Leu B:45 - Asp B:46   [ RasMol ]  
 

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  G3BP1_HUMAN | Q13283
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G3BP1_HUMAN | Q13283: 3q90 4fcj 4iia 5fw5

(-) Related Entries Specified in the PDB File

3q90 3ujm 4fcj