Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) CATALYTIC DOMAIN
 
Authors :  Z. Wang, Z. Cheng, W. Xu
Date :  23 May 12  (Deposition) - 06 Jun 12  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Mouse, Parg, Poly(Adp-Ribose) Glycohydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Wang, J. -P. Gagne, G. G. Poirier, W. Xu
Crystallographic And Biochemical Analysis Of The Mouse Poly(Adp-Ribose) Glycohydrolase
Plos One V. 9 86010 2014
PubMed: search

(-) Compounds

Molecule 1 - POLY(ADP-RIBOSE) GLYCOHYDROLASE
    ChainsA, B, C, D
    EC Number3.2.1.143
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 439-959
    GenePARG
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 64)

Asymmetric Unit (2, 64)
No.NameCountTypeFull Name
1MSE36Mod. Amino AcidSELENOMETHIONINE
2SO428Ligand/IonSULFATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO47Ligand/IonSULFATE ION
Biological Unit 2 (2, 16)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO47Ligand/IonSULFATE ION
Biological Unit 3 (2, 16)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO47Ligand/IonSULFATE ION
Biological Unit 4 (2, 16)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO47Ligand/IonSULFATE ION

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:465 , SER A:466 , ARG A:468 , HOH A:1274 , HOH A:1327BINDING SITE FOR RESIDUE SO4 A 1001
02AC2SOFTWAREARG A:528 , TYR A:557 , PRO A:636 , ARG A:637 , ASN A:639BINDING SITE FOR RESIDUE SO4 A 1002
03AC3SOFTWAREARG A:656 , GLY A:739 , ALA A:743 , GLY A:744 , HIS C:951BINDING SITE FOR RESIDUE SO4 A 1003
04AC4SOFTWAREASN A:733 , ARG A:734 , HOH A:1117 , HOH A:1260 , HOH A:1346BINDING SITE FOR RESIDUE SO4 A 1004
05AC5SOFTWAREARG A:824 , LYS C:444 , ARG C:902BINDING SITE FOR RESIDUE SO4 A 1005
06AC6SOFTWAREARG A:637 , LYS A:643 , SER A:644 , GLU A:645BINDING SITE FOR RESIDUE SO4 A 1006
07AC7SOFTWAREARG A:724 , HIS A:798 , ASP A:800 , GLY A:801BINDING SITE FOR RESIDUE SO4 A 1007
08AC8SOFTWAREPRO B:465 , SER B:466 , ARG B:468 , HOH B:1291 , ARG C:468 , HOH C:1264BINDING SITE FOR RESIDUE SO4 B 1001
09AC9SOFTWAREARG B:528 , PRO B:636 , ARG B:637 , ASN B:639 , HOH B:1239BINDING SITE FOR RESIDUE SO4 B 1002
10BC1SOFTWAREARG B:656 , GLY B:739 , GLY B:742 , ALA B:743 , GLY B:744 , HIS D:951BINDING SITE FOR RESIDUE SO4 B 1003
11BC2SOFTWAREASN B:733 , ARG B:734 , HIS B:821 , HOH B:1161 , HOH B:1170BINDING SITE FOR RESIDUE SO4 B 1004
12BC3SOFTWAREARG B:824 , LYS D:444 , ARG D:902BINDING SITE FOR RESIDUE SO4 B 1005
13BC4SOFTWAREARG B:637 , LYS B:643 , SER B:644 , GLU B:645BINDING SITE FOR RESIDUE SO4 B 1006
14BC5SOFTWAREARG B:724 , HIS B:798 , ASP B:800 , GLY B:801BINDING SITE FOR RESIDUE SO4 B 1007
15BC6SOFTWARESER C:466 , ARG C:468 , HOH C:1393BINDING SITE FOR RESIDUE SO4 C 1001
16BC7SOFTWAREARG C:528 , PRO C:636 , ARG C:637 , ASN C:639 , HOH C:1236 , HOH C:1326BINDING SITE FOR RESIDUE SO4 C 1002
17BC8SOFTWAREHIS A:951 , ARG C:656 , GLY C:742 , ALA C:743 , GLY C:744BINDING SITE FOR RESIDUE SO4 C 1003
18BC9SOFTWAREASN C:733 , ARG C:734 , HIS C:821 , HOH C:1141 , HOH C:1277BINDING SITE FOR RESIDUE SO4 C 1004
19CC1SOFTWARELYS A:444 , ARG A:902 , HOH A:1351 , ARG C:824 , HOH C:1330BINDING SITE FOR RESIDUE SO4 C 1005
20CC2SOFTWAREARG C:637 , SER C:644 , GLU C:645 , HOH C:1446BINDING SITE FOR RESIDUE SO4 C 1006
21CC3SOFTWAREARG C:724 , HIS C:798 , GLU C:799 , ASP C:800 , GLY C:801BINDING SITE FOR RESIDUE SO4 C 1007
22CC4SOFTWARESER D:466 , ARG D:468 , HOH D:1353BINDING SITE FOR RESIDUE SO4 D 1001
23CC5SOFTWAREARG D:528 , TYR D:557 , PRO D:636 , ARG D:637 , ASN D:639 , HOH D:1173 , HOH D:1246BINDING SITE FOR RESIDUE SO4 D 1002
24CC6SOFTWAREHIS B:951 , ARG D:656 , GLY D:739 , ALA D:743 , GLY D:744BINDING SITE FOR RESIDUE SO4 D 1003
25CC7SOFTWAREASN D:733 , ARG D:734 , HIS D:821 , HOH D:1126 , HOH D:1238BINDING SITE FOR RESIDUE SO4 D 1004
26CC8SOFTWARELYS B:444 , ARG B:902 , ARG D:824 , HOH D:1307BINDING SITE FOR RESIDUE SO4 D 1005
27CC9SOFTWAREARG D:637 , LYS D:643 , SER D:644 , GLU D:645 , HOH D:1317BINDING SITE FOR RESIDUE SO4 D 1006
28DC1SOFTWAREARG D:724 , HIS D:798 , ASP D:800 , GLY D:801BINDING SITE FOR RESIDUE SO4 D 1007

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FC2)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Mse A:457 -Pro A:458
2Phe A:491 -Pro A:492
3Mse B:457 -Pro B:458
4Phe B:491 -Pro B:492
5Mse C:457 -Pro C:458
6Phe C:491 -Pro C:492
7Mse D:457 -Pro D:458
8Phe D:491 -Pro D:492

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FC2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FC2)

(-) Exons   (0, 0)

(no "Exon" information available for 4FC2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:508
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.hhhhh..................eee.....................................ee...eehhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeehhhhhhhhhhhhh.....................hhhhh....hhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhh......eeee...hhhhhh...eeeee..............hhhhhhhhhhhhhhhhhhhh......eeeeee.....eeee.hhhhheeeee...............eeeee......hhhhhhhhhhhhhhhhhhhhhhh....hhhhh..eeee...hhhhh.hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fc2 A 442 PEKKWLGTPIEEmRKmPRCGIHLPSLRPSASHTVTVRVDLLRAGEVPKPFPTHYKDLWDNKHVKmPCSEQNLYPTAGSRWELIQTALLNKFTRPQNLKDAILKYNVAYSKKWDFTALVDFWDKVLEEAEAQHLYQSILPDmVKIALCLPNICTQPIPLLKQKmNHSVTmSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGmLQVDFANRFVGGGVTGAGLVQEEIRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRRCTEIVAIDALHFRRYLDQFVPEKVRRELNKAYCGFLRPGVPSENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERDVVYFTFGDSELmRDIYSmHTFLTERKLDVGKVYKLLLRYYNEECRNCSTPGPDIKLYPFIYHAVESSA 957
                                   451  |  | 461       471       481       491       501    |  511   ||  529       539       549       559       569       579       589|      599       609  |    619       629       639       649       659       669       679       689       699       709       719      |729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899 |     909       919       929       939       949        
                                      454-MSE                                             506-MSE  515|                                                               590-MSE               612-MSE |                                                                                                         726-MSE                                                                                                                                                                        901-MSE |                                                  
                                         457-MSE                                                    524                                                                                           618-MSE                                                                                                                                                                                                                                                                                          907-MSE                                              

Chain B from PDB  Type:PROTEIN  Length:507
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.hhhhh..................eee..hhhhh..............................ee..eehhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeehhhhhhhhhhhhh.....................hhhhh....hhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhh......eeee...hhhhhh...eeeee..............hhhhhhhhhhhhhhhhhhhh......eeeeee.....eeee.hhhhheeeee...............eeeee......hhhhhhhhhhhhhhhhhhhhhhh....hhhhh..eeee...hhhhh.hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fc2 B 442 PEKKWLGTPIEEmRKmPRCGIHLPSLRPSASHTVTVRVDLLRAGEVPKPFPTHYKDLWDNKHVKmPCSEQNLYPAGSRWELIQTALLNKFTRPQNLKDAILKYNVAYSKKWDFTALVDFWDKVLEEAEAQHLYQSILPDmVKIALCLPNICTQPIPLLKQKmNHSVTmSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGmLQVDFANRFVGGGVTGAGLVQEEIRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRRCTEIVAIDALHFRRYLDQFVPEKVRRELNKAYCGFLRPGVPSENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERDVVYFTFGDSELmRDIYSmHTFLTERKLDVGKVYKLLLRYYNEECRNCSTPGPDIKLYPFIYHAVESSA 957
                                   451  |  | 461       471       481       491       501    |  511   ||  530       540       550       560       570       580       590       600       610 |     620       630       640       650       660       670       680       690       700       710       720     | 730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900|     |910       920       930       940       950       
                                      454-MSE                                             506-MSE  515|                                                              590-MSE               612-MSE |                                                                                                         726-MSE                                                                                                                                                                        901-MSE |                                                  
                                         457-MSE                                                    525                                                                                          618-MSE                                                                                                                                                                                                                                                                                          907-MSE                                              

Chain C from PDB  Type:PROTEIN  Length:508
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.hhhhh..................eee..hhhhh..............................ee...eehhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeehhhhhhhhhhhhh.....................hhhhh....hhhhhhhhhhhhhhhhhhhh....eeeeeeee................eeee...hhhhhh...eeeee..............hhhhhhhhhhhhhhhhhhhh......eeeeee.....eeee.hhhhheeeee...............eeeee......hhhhhhhhhhhhhhhhhhhhhhh....hhhhh..eeee...hhhhh.hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fc2 C 442 PEKKWLGTPIEEmRKmPRCGIHLPSLRPSASHTVTVRVDLLRAGEVPKPFPTHYKDLWDNKHVKmPCSEQNLYPTAGSRWELIQTALLNKFTRPQNLKDAILKYNVAYSKKWDFTALVDFWDKVLEEAEAQHLYQSILPDmVKIALCLPNICTQPIPLLKQKmNHSVTmSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGmLQVDFANRFVGGGVTGAGLVQEEIRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRRCTEIVAIDALHFRRYLDQFVPEKVRRELNKAYCGFLRPGVPSENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERDVVYFTFGDSELmRDIYSmHTFLTERKLDVGKVYKLLLRYYNEECRNCSTPGPDIKLYPFIYHAVESSA 957
                                   451  |  | 461       471       481       491       501    |  511   ||  529       539       549       559       569       579       589|      599       609  |    619       629       639       649       659       669       679       689       699       709       719      |729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899 |     909       919       929       939       949        
                                      454-MSE                                             506-MSE  515|                                                               590-MSE               612-MSE |                                                                                                         726-MSE                                                                                                                                                                        901-MSE |                                                  
                                         457-MSE                                                    524                                                                                           618-MSE                                                                                                                                                                                                                                                                                          907-MSE                                              

Chain D from PDB  Type:PROTEIN  Length:508
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.hhhhh..................eee..hhhhh..............................ee..eehhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeehhhhhhhhhhhhh.....................hhhhh....hhhhhhhhhhhhhhhhhhhh....eeeeeeee................eeee...hhhhhh...eeeee..............hhhhhhhhhhhhhhhhhhhh......eeeeee.....eeee.hhhhheeeee...............eeeee......hhhhhhhhhhhhhhhhhhhhhhh....hhhhh..eeee...hhhhh.hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fc2 D 441 PPEKKWLGTPIEEmRKmPRCGIHLPSLRPSASHTVTVRVDLLRAGEVPKPFPTHYKDLWDNKHVKmPCSEQNLYPAGSRWELIQTALLNKFTRPQNLKDAILKYNVAYSKKWDFTALVDFWDKVLEEAEAQHLYQSILPDmVKIALCLPNICTQPIPLLKQKmNHSVTmSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGmLQVDFANRFVGGGVTGAGLVQEEIRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRRCTEIVAIDALHFRRYLDQFVPEKVRRELNKAYCGFLRPGVPSENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERDVVYFTFGDSELmRDIYSmHTFLTERKLDVGKVYKLLLRYYNEECRNCSTPGPDIKLYPFIYHAVESSA 957
                                   450   |  |460       470       480       490       500     | 510    || 529       539       549       559       569       579       589|      599       609  |    619       629       639       649       659       669       679       689       699       709       719      |729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899 |     909       919       929       939       949        
                                       454-MSE                                             506-MSE  515|                                                              590-MSE               612-MSE |                                                                                                         726-MSE                                                                                                                                                                        901-MSE |                                                  
                                          457-MSE                                                    525                                                                                          618-MSE                                                                                                                                                                                                                                                                                          907-MSE                                              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FC2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FC2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FC2)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Mse A:457 - Pro A:458   [ RasMol ]  
    Mse B:457 - Pro B:458   [ RasMol ]  
    Mse C:457 - Pro C:458   [ RasMol ]  
    Mse D:457 - Pro D:458   [ RasMol ]  
    Phe A:491 - Pro A:492   [ RasMol ]  
    Phe B:491 - Pro B:492   [ RasMol ]  
    Phe C:491 - Pro C:492   [ RasMol ]  
    Phe D:491 - Pro D:492   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4fc2
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PARG_MOUSE | O88622
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.2.1.143
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PARG_MOUSE | O88622
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARG_MOUSE | O886224n9y 4n9z 4na0 4na4 4na5 4na6

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4FC2)