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(-) Description

Title :  CRYSTAL STRUCTURE OF DELTARHODOPSIN FROM HALOTERRIGENA THERMOTOLERANS
 
Authors :  T. Kouyama
Date :  23 May 12  (Deposition) - 15 May 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  7 Transmembrane Helices, Light-Driven Proton Pump, Cell Membrane, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhang, K. Mizuno, Y. Murata, H. Koide, M. Murakami, K. Ihara, T. Kouyama
Crystal Structure Of Deltarhodopsin-3 From Haloterrigena Thermotolerans
Proteins V. 81 1585 2013
PubMed-ID: 23625688  |  Reference-DOI: 10.1002/PROT.24316

(-) Compounds

Molecule 1 - DELTARHODOPSIN
    Chains: A
    Engineered: YES
    Expression System: HALOBACTERIUM SALINARUM
    Expression System Strain: MPK409
    Expression System Taxid: 2242
    Organism Scientific: HALOTERRIGENA THERMOTOLERANS
    Organism Taxid: 121872

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 9)

Asymmetric Unit (6, 9)
No.NameCountTypeFull Name
122B1Ligand/IonBACTERIORUBERIN
2BNG2Ligand/IonB-NONYLGLUCOSIDE
3L2P1Ligand/Ion2,3-DI-PHYTANYL-GLYCEROL
4RET1Ligand/IonRETINAL
5SO43Ligand/IonSULFATE ION
6SQL1Ligand/Ion(6E,10E,14E,18E)-2,6,10,15,19,23-HEXAMETHYLTETRACOSA-2,6,10,14,18,22-HEXAENE
Biological Unit 1 (6, 27)
No.NameCountTypeFull Name
122B3Ligand/IonBACTERIORUBERIN
2BNG6Ligand/IonB-NONYLGLUCOSIDE
3L2P3Ligand/Ion2,3-DI-PHYTANYL-GLYCEROL
4RET3Ligand/IonRETINAL
5SO49Ligand/IonSULFATE ION
6SQL3Ligand/Ion(6E,10E,14E,18E)-2,6,10,15,19,23-HEXAMETHYLTETRACOSA-2,6,10,14,18,22-HEXAENE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:85 , THR A:89 , LEU A:92 , MET A:117 , TRP A:137 , SER A:140 , THR A:141 , TRP A:181 , TYR A:184 , PRO A:185 , TRP A:188 , ASP A:212 , LYS A:216BINDING SITE FOR RESIDUE RET A 301
2AC2SOFTWAREGLY A:30 , ARG A:31 , GLN A:39 , TYR A:42 , ILE A:43 , THR A:46 , PHE A:47 , THR A:50 , THR A:109 , PHE A:116 , ILE A:139 , ALA A:143 , VAL A:150 , THR A:154BINDING SITE FOR RESIDUE 22B A 302
3AC3SOFTWAREPHE A:47 , ILE A:51 , TRP A:79 , ARG A:104 , ASN A:105 , ALA A:108 , VAL A:115BINDING SITE FOR RESIDUE SQL A 303
4AC4SOFTWAREPHE A:87 , ARG A:104BINDING SITE FOR RESIDUE L2P A 304
5AC5SOFTWAREALA A:102 , ASN A:103 , ARG A:104 , PRO A:236BINDING SITE FOR RESIDUE BNG A 305
6AC6SOFTWARETYR A:25 , VAL A:221BINDING SITE FOR RESIDUE BNG A 306
7AC7SOFTWARESER A:156 , ARG A:160 , ARG A:174BINDING SITE FOR RESIDUE SO4 A 307
8AC8SOFTWAREARG A:29 , ARG A:225 , SER A:226 , ARG A:227BINDING SITE FOR RESIDUE SO4 A 308
9AC9SOFTWAREGLY A:32 , VAL A:33 , ARG A:34 , ASP A:35 , ARG A:227 , ARG A:231BINDING SITE FOR RESIDUE SO4 A 309

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FBZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FBZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FBZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FBZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4FBZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains d4fbza_ A: automated matches                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh....eeee....eeee.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fbz A   1 MAATVGPESIWLWIGTIGMTLGTLYFVGRGRGVRDRKMQEFYIITTFITTIAAAMYFAMATGFGVTEVVVGDEALTIYWARYADWLFTTPLLLLDLGLLAGANRNTIATLIGLDVFMIGTGMIAAFAATPGTRIAWWGISTGALLALLYVLVGTLSKDARGQSPEVASLFGRLRNLVIVLWLLYPVVWILGTEGTFGILPLYWETAAFMVLDLSAKVGFGVVLLRSRSVLRRVVTPTA 238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FBZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FBZ)

(-) Gene Ontology  (5, 5)

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1iw6 STRUCTURE OF BACTERIORHODOPSIN