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(-) Description

Title :  SUBSTRATE P2/NC IN COMPLEX WITH A HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 PROTEASE VARIANT
 
Authors :  Y. Wang, T. G. Dewdney, Z. Liu, S. J. Reiter, J. S. Brunzelle, I. A. Kovari L. C. Kovari
Date :  22 May 12  (Deposition) - 29 Aug 12  (Release) - 29 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,D
Keywords :  Protease, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Wang, T. G. Dewdney, Z. Liu, S. J. Reiter, J. S. Brunzelle, I. A. Kovari, L. C. Kovari
Higher Desolvation Energy Reduces Molecular Recognition In Multi-Drug Resistant Hiv-1 Protease
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HIV-1 PROTEASE
    Chains: A, B
    EC Number: 3.4.23.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
 
Molecule 2 - SUBSTRATE P2/NC PEPTIDE
    Chains: D
    Engineered: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4FAE)

(-) Sites  (0, 0)

(no "Site" information available for 4FAE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FAE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FAE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FAE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FAE)

(-) Exons   (0, 0)

(no "Exon" information available for 4FAE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee.......ee.........eeeeee....eeeeeeeeeeeeee..eeeeeeeee......eehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  4fae A  1 PQITLWQRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPTPTNVIGRNLMTQIGCTLNF 99
                                    10        20        30        40        50        60        70        80        90         


Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee.......ee........eeeeee......eeeeeeeeeeeee..eeeeeeeee......eehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  4fae B  1 PQITLWQRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPTPTNVIGRNLMTQIGCTLNF 99
                                    10        20        30        40        50        60        70        80        90         


Chain D from PDB  Type:PROTEIN  Length:7
                                      
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                  4fae D  1 TIMMQRG  7
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FAE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FAE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FAE)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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  4fae
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  Q000H7_9HIV1 | Q000H7
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  Q9YP46_9HIV1 | Q9YP46
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  3.4.23.16
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q000H7_9HIV1 | Q000H7: 3oq7 3oqa 3oqd 3oty 3ou1 3ou3 3ou4 3oua 3oub 3ouc 3oud 3pj6
        Q9YP46_9HIV1 | Q9YP46: 2l45 2l46 3oua 3ouc 3p9g 3p9h
UniProtKB/TrEMBL
        Q000H7_9HIV1 | Q000H7: 3r0w 3r0y 3so9 3spk 4eyr 4faf 4l1a 4nkk
        Q9YP46_9HIV1 | Q9YP46: 2l44 4ep3 4epj 4eq0

(-) Related Entries Specified in the PDB File

1tw7 UNCOMPLEXED MULTI-DRUG RESISTANT HIV-1 PROTEASE VARIANT, MDR 769
3oq7 UNCOMPLEXED MULTI-DRUG RESISTANT HIV-1 PROTEASE VARIANT, MDR 769 82T
4faf SUBSTRATE CA/P2 IN COMPLEX WITH A HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 PROTEASE VARIANT