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(-) Description

Title :  PENICILLIUM CANESCENS ENDO-1,4-BETA-XYLANASE XYLE
 
Authors :  K. M. Polyakov, A. A. Trofimov, T. V. Fedorova, O. V. Koroleva, I. G. Mais A. M. Chulkin, E. A. Vavilova, S. V. Benevolenskii
Date :  18 May 12  (Deposition) - 30 May 12  (Release) - 30 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Barrel, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  

PubMed: search

(-) Compounds

Molecule 1 - ENDO-1,4-BETA-XYLANASE
    Chains: A
    EC Number: 3.2.1.8
    Engineered: YES
    Expression System: PENICILLIUM CANESCENS
    Expression System Plasmid: PPCG 2.6
    Expression System Strain: PCE-7
    Expression System Taxid: 5083
    Expression System Vector Type: PLASMID
    Gene: XYLE
    Organism Scientific: PENICILLIUM CANESCENS
    Organism Taxid: 5083

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:281 , GLN A:286 , ASN A:336 , GLU A:340 , NAG A:402 , HOH A:522 , HOH A:608 , HOH A:623BINDING SITE FOR RESIDUE NAG A 401
2AC2SOFTWARETYR A:281 , NAG A:401 , BMA A:403 , HOH A:521 , HOH A:553 , HOH A:841BINDING SITE FOR RESIDUE NAG A 402
3AC3SOFTWARENAG A:402 , BMA A:404 , BMA A:405BINDING SITE FOR RESIDUE BMA A 403
4AC4SOFTWAREBMA A:403BINDING SITE FOR RESIDUE BMA A 404
5AC5SOFTWAREBMA A:403BINDING SITE FOR RESIDUE BMA A 405
6AC6SOFTWAREASN A:88 , THR A:90BINDING SITE FOR RESIDUE NAG A 406

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:108 -A:150
2A:300 -A:307
3A:357 -A:360

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ile A:47 -Pro A:48
2His A:109 -Asn A:110
3Val A:278 -Pro A:279

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F8X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F8X)

(-) Exons   (0, 0)

(no "Exon" information available for 4F8X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4f8xa_ A: automated matches                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.eeee....hhhh.eee..ee.hhhhhhhhhhhhhh..eeeeeeee.....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhhhhh.....eeee..eee.....hhhhhhhhhhhhhhh..eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhh...............hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f8x A  26 DIDLNKLAQRRGKHWFGTAADIPGTAETTDAAYLKVLKQNFGEITPANAMKFMYTETEQNVFNFTEGEQFLEVAERFGSKVRCHNLVWASQVSDFVTSKTWTAKELTAVMKNHIFKTVQHFGRRCYSWDVVNEALNGDGTFSSSVWYDTIGEEYFYLAFKYAQEALAQIGANDVKLYYNDYGIENPGTKSTAVLQLVSNLRKRGIRIDGVGLESHFIVGETPSLADQLATKQAYIKANLDVAVTELDVRFSTVPYYTAAAQKQQAEDYYVSVASCMNAGPRCIGVVVWDFDDAYSWVPSAFAGQGGACLFNNTLEAKPAYYAVADALEGKPCSVC 360
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F8X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F8X)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    His A:109 - Asn A:110   [ RasMol ]  
    Ile A:47 - Pro A:48   [ RasMol ]  
    Val A:278 - Pro A:279   [ RasMol ]  
 

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