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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF BOTULINUM NEUROTOXIN MOSAIC SEROTYPE C/D WITH A TETRAETHYLENE GLYCOL MOLECULE BOUND ON THE HCN SUB-DOMAIN AND A SULFATE ION AT THE PUTATIVE ACTIVE SITE
 
Authors :  Y. Zhang, G. W. Buchko, A. Gardberg, T. E. Edwards, B. Sankaran, H. Robin S. M. Varnum, Seattle Structural Genomics Center For Infectiou (Ssgcid)
Date :  16 May 12  (Deposition) - 20 Jun 12  (Release) - 12 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Botulinum Neurotoxin, Mosaic Serotype C/D, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zhang, A. S. Gardberg, T. E. Edwards, B. Sankaran, H. Robinson, S. M. Varnum, G. W. Buchko
Structural Insights Into The Functional Role Of The Hcn Sub-Domain Of The Receptor-Binding Domain Of The Botulinum Neurotoxin Mosaic Serotype C/D.
Biochimie V. 95 1379 2013
PubMed-ID: 23523511  |  Reference-DOI: 10.1016/J.BIOCHI.2013.03.006

(-) Compounds

Molecule 1 - TYPE C NEUROTOXIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PJEXPRESS401
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 867-1280
    Gene: BONT/C
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 1491

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2PG43Ligand/IonTETRAETHYLENE GLYCOL
3SO43Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:949 , LEU A:997 , GLY A:1156 , SER A:1210 , LYS A:1212 , PHE A:1225 , TYR A:1258 , HOH A:1629BINDING SITE FOR RESIDUE PG4 A 1301
2AC2SOFTWAREMET A:1016 , GLU A:1034 , ASN A:1095 , LYS A:1098 , THR A:1101 , TYR A:1150 , ASP A:1275 , PRO A:1276 , HOH A:1493BINDING SITE FOR RESIDUE PG4 A 1302
3AC3SOFTWARESER A:1072 , ASN A:1073 , LYS A:1142 , HOH A:1484 , HOH A:1558 , HOH A:1600BINDING SITE FOR RESIDUE SO4 A 1303
4AC4SOFTWARETYR A:1114 , LYS A:1136 , ASN A:1137 , TYR A:1165BINDING SITE FOR RESIDUE SO4 A 1304
5AC5SOFTWARETYR A:1108 , LYS A:1219 , TYR A:1220 , CYS A:1221 , LYS A:1270 , HOH A:1565 , HOH A:1697BINDING SITE FOR RESIDUE GOL A 1305
6AC6SOFTWARETYR A:905 , THR A:906 , ASN A:907 , ASP A:1063 , LEU A:1085 , ARG A:1152 , HOH A:1551BINDING SITE FOR RESIDUE GOL A 1306
7AC7SOFTWAREASP A:1175 , THR A:1176 , ASP A:1177 , LYS A:1196 , ARG A:1243BINDING SITE FOR RESIDUE SO4 A 1307
8AC8SOFTWARETYR A:932 , SER A:935 , SER A:959 , TRP A:966 , ASN A:1013 , ASP A:1042BINDING SITE FOR RESIDUE PG4 A 1308

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:1187 -A:1191

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F83)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F83)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F83)

(-) Exons   (0, 0)

(no "Exon" information available for 4F83)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:413
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4f83a1 A:867-1071 automated matches                                                                                                                                                                      d4f83a2 A:1072-1282 automated matches                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhh.eeeeeeee..eeee......eeeee...........eeeee....eeeee.hhhhhh..eeeeeeeeeehhhhhhh..eeeeeeeee..eeeeeeee..eeeeeee.....eeeeeee..............eeeeeeee...eeeeee..eeeeeee...........eeee..........eeeeeeeeee....hhhhhhhhhhhhh...................eeee.....eeeeee..eeeeee............eeeee..............eeeeeeee..eeeeeee.....hhhhh.......eeeeeee.....hhhhheeeee........eeeee.....eeeeeeee.........eeeeeee..hhhhh.hhhh.eeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4f83 A  867 SINDSKILSLQNKKNALVDTSGYNAEVRLEGDVQVNTIYTNDFKLSSSGDKIIVNLNNNILYYENSSVSFWIKISKDLTNSHNEYTIINSIKQNSGWKLCIRNGNIEWILQDINRKYKSLIFDYSESLSHTGYTNKWFFVTITNNIMGYMKLYINGELKQSERIEDLDEVKLDKTIVFGIDENIDENQMLWIRDFNIFSKELSNEDINIVYEGQILRNVIKDYWGNPLKFDTEYYMINYNYIDRYIAPKNNILVLVQYSDISKLYTKNPITIKSAANKNPYSRILNGDDIMFHMLYDSREYMIIRDTDTIYATQGGQCSKNCVYALKLQSNLGNYGIGIFSIKNIVSQNKYCSQIFSSFMKNTMLLADIYKPWRFSFENAYTPVAVTNYETKLLSTSSFWKFISRDPGWVEHH 1282
                                   876       886       896       906       916       926 ||    939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279   
                                                                                       928|                                                                                                                                                                                                                                                                                                                                                              
                                                                                        932
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F83)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F83)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  4f83
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