Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF ISOPROPYLMALATE DEHYDROGENASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH IPM, MN AND NADH
 
Authors :  A. Pallo, E. Graczer, P. Zavodszky, M. S. Weiss, M. Vas
Date :  16 May 12  (Deposition) - 13 Jun 12  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Isopropylmalate Dehydrogenase, 3-Ipm-Dh, Beta-Ipm Dehydrogenase, Imdh, Ipmdh, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Pallo, J. Olah, E. Graczer, A. Merli, P. Zavodszky, M. S. Weiss, M. Va
Structural And Energetic Basis Of Isopropylmalate Dehydrogenase Enzyme Catalysis.
Febs J. V. 281 5063 2014
PubMed-ID: 25211160  |  Reference-DOI: 10.1111/FEBS.13044

(-) Compounds

Molecule 1 - 3-ISOPROPYLMALATE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.85
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PET21C
    Gene: LEUB, TTHA1230
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: 3-IPM-DH, BETA-IPM DEHYDROGENASE, IMDH

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 57)

Asymmetric Unit (7, 57)
No.NameCountTypeFull Name
1EOH6Ligand/IonETHANOL
2GOL29Ligand/IonGLYCEROL
3IPM4Ligand/Ion3-ISOPROPYLMALIC ACID
4K7Ligand/IonPOTASSIUM ION
5MN4Ligand/IonMANGANESE (II) ION
6MPO3Ligand/Ion3[N-MORPHOLINO]PROPANE SULFONIC ACID
7NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (5, 23)
No.NameCountTypeFull Name
1EOH2Ligand/IonETHANOL
2GOL16Ligand/IonGLYCEROL
3IPM2Ligand/Ion3-ISOPROPYLMALIC ACID
4K-1Ligand/IonPOTASSIUM ION
5MN-1Ligand/IonMANGANESE (II) ION
6MPO1Ligand/Ion3[N-MORPHOLINO]PROPANE SULFONIC ACID
7NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 2 (5, 23)
No.NameCountTypeFull Name
1EOH4Ligand/IonETHANOL
2GOL13Ligand/IonGLYCEROL
3IPM2Ligand/Ion3-ISOPROPYLMALIC ACID
4K-1Ligand/IonPOTASSIUM ION
5MN-1Ligand/IonMANGANESE (II) ION
6MPO2Ligand/Ion3[N-MORPHOLINO]PROPANE SULFONIC ACID
7NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (57, 57)

Asymmetric Unit (57, 57)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:94 , ARG A:104 , ARG A:132 , TYR A:139 , ASP A:241 , NAD A:900 , MN A:999 , HOH A:2002 , HOH A:2022 , LYS B:185 , VAL B:188 , ASP B:217 , HOH B:2013BINDING SITE FOR RESIDUE IPM A 800
02AC2SOFTWAREILE A:11 , SER A:71 , VAL A:72 , GLY A:73 , GLY A:74 , GLU A:87 , LEU A:90 , LEU A:254 , GLU A:270 , HIS A:273 , GLY A:274 , SER A:275 , ALA A:276 , PRO A:277 , ASP A:278 , ILE A:279 , ASN A:286 , IPM A:800 , K A:1001 , GOL A:1003 , GOL A:1005 , HOH A:2004 , HOH A:2006 , HOH A:2022 , HOH A:2023 , HOH A:2033 , HOH A:2044 , HOH A:2076 , HOH A:2086 , HOH A:2100 , ASN B:187 , TYR B:215 , ALA B:218 , HIS B:222BINDING SITE FOR RESIDUE NAD A 900
03AC3SOFTWARELYS A:175 , ARG A:176 , GLU A:299 , HIS A:300 , GOL A:1009BINDING SITE FOR RESIDUE MPO A 950
04AC4SOFTWAREASP A:241 , IPM A:800 , HOH A:2001 , HOH A:2002 , ASP B:217BINDING SITE FOR RESIDUE MN A 999
05AC5SOFTWAREGLY A:70 , SER A:71 , GLU A:270 , PRO A:271 , HIS A:273 , NAD A:900BINDING SITE FOR RESIDUE K A 1001
06AC6SOFTWAREGLU A:62 , ALA A:64 , THR A:266BINDING SITE FOR RESIDUE K A 1002
07AC7SOFTWAREGLY A:73 , GLY A:74 , TRP A:77 , ASP A:78 , ARG A:85 , GLU A:87 , NAD A:900 , TYR B:215BINDING SITE FOR RESIDUE GOL A 1003
08AC8SOFTWAREGLU A:155 , TYR A:157 , VAL A:183 , VAL A:191 , GLY A:192 , TRP A:195 , THR A:235 , GLY A:236 , PHE A:239 , HOH A:2018 , HOH A:2068BINDING SITE FOR RESIDUE GOL A 1004
09AC9SOFTWARESER A:253 , LEU A:254 , ASP A:326 , NAD A:900 , HOH A:2100 , MET B:221 , ARG B:225 , HOH B:2038BINDING SITE FOR RESIDUE GOL A 1005
10BC1SOFTWARELYS A:95 , GLY A:136 , GLY A:137 , ARG A:156 , GLU A:161 , HOH A:2039BINDING SITE FOR RESIDUE GOL A 1006
11BC2SOFTWARELYS A:107 , VAL A:108 , PHE A:109 , LEU A:112 , PRO A:251 , LEU A:319 , GOL A:1008 , HOH A:2064BINDING SITE FOR RESIDUE GOL A 1007
12BC3SOFTWAREPRO A:105 , ALA A:106 , LYS A:107 , PHE A:109 , LEU A:256 , GOL A:1007 , GOL A:1009BINDING SITE FOR RESIDUE GOL A 1008
13BC4SOFTWAREALA A:295 , MET A:296 , GLU A:299 , GLU A:312 , MPO A:950 , GOL A:1008BINDING SITE FOR RESIDUE GOL A 1009
14BC5SOFTWAREGLY A:263 , GOL A:1011BINDING SITE FOR RESIDUE GOL A 1010
15BC6SOFTWAREARG A:164 , ARG A:167 , GLU A:171 , GOL A:1010BINDING SITE FOR RESIDUE GOL A 1011
16BC7SOFTWAREMET A:221 , ARG A:225 , SER B:253 , LEU B:254BINDING SITE FOR RESIDUE EOH A 1012
17BC8SOFTWARELYS A:185 , ASP A:217 , HOH A:2013 , LEU B:91 , ARG B:94 , ARG B:104 , ARG B:132 , TYR B:139 , ASP B:241 , NAD B:900 , MN B:999 , HOH B:2021BINDING SITE FOR RESIDUE IPM B 800
18BC9SOFTWAREASN A:187 , TYR A:215 , ALA A:218 , HOH A:2061 , ILE B:11 , SER B:71 , VAL B:72 , GLY B:73 , GLY B:74 , GLU B:87 , LEU B:90 , LEU B:254 , GLU B:270 , VAL B:272 , HIS B:273 , GLY B:274 , SER B:275 , ALA B:276 , PRO B:277 , ASP B:278 , ILE B:279 , ASN B:286 , IPM B:800 , K B:1001 , GOL B:1004 , HOH B:2009 , HOH B:2016 , HOH B:2021 , HOH B:2035 , HOH B:2044 , HOH B:2046BINDING SITE FOR RESIDUE NAD B 900
19CC1SOFTWAREASP A:217 , ASP B:241 , IPM B:800 , HOH B:2001 , HOH B:2002BINDING SITE FOR RESIDUE MN B 999
20CC2SOFTWAREGLY B:70 , SER B:71 , GLU B:270 , PRO B:271 , HIS B:273 , NAD B:900BINDING SITE FOR RESIDUE K B 1001
21CC3SOFTWAREGLU B:62 , ALA B:64 , THR B:266 , HOH B:2050 , HOH B:2051BINDING SITE FOR RESIDUE K B 1002
22CC4SOFTWAREGLU B:155 , TYR B:157 , VAL B:183 , TRP B:195 , THR B:235 , GLY B:236 , PHE B:239 , HOH B:2037 , HOH B:2098BINDING SITE FOR RESIDUE GOL B 1003
23CC5SOFTWARETYR A:215 , GLY B:73 , GLY B:74 , TRP B:77 , ASP B:78 , ARG B:85 , GLU B:87 , NAD B:900 , HOH B:2093 , HOH B:2108BINDING SITE FOR RESIDUE GOL B 1004
24CC6SOFTWAREPRO A:143 , ARG A:156 , ASP B:47 , LYS B:76 , TRP B:77 , LEU B:80 , PRO B:143 , TRP B:152 , HOH B:2024BINDING SITE FOR RESIDUE GOL B 1005
25CC7SOFTWARELYS B:107 , VAL B:108 , PHE B:109 , PRO B:251 , GOL B:1007 , HOH B:2057BINDING SITE FOR RESIDUE GOL B 1006
26CC8SOFTWAREPRO B:105 , ALA B:106 , LYS B:107 , LEU B:256 , LEU B:257 , LEU B:292 , GOL B:1006 , GOL B:1008BINDING SITE FOR RESIDUE GOL B 1007
27CC9SOFTWAREPRO B:105 , ALA B:295 , MET B:296 , GLU B:312 , GOL B:1007BINDING SITE FOR RESIDUE GOL B 1008
28DC1SOFTWAREPRO B:7 , PRO B:13 , GLU B:17BINDING SITE FOR RESIDUE EOH B 1009
29DC2SOFTWAREGLU B:200 , GLY B:203 , TYR B:206 , VAL B:209 , LEU B:211 , HOH B:2080 , HOH B:2117BINDING SITE FOR RESIDUE GOL B 1010
30DC3SOFTWARELEU C:90 , LEU C:91 , ARG C:94 , ARG C:104 , ARG C:132 , TYR C:139 , ASP C:241 , NAD C:900 , MN C:999 , HOH C:2001 , HOH C:2014 , LYS D:185 , VAL D:188 , ASP D:217 , HOH D:2007BINDING SITE FOR RESIDUE IPM C 800
31DC4SOFTWAREILE C:11 , SER C:71 , VAL C:72 , GLY C:73 , GLY C:74 , GLU C:87 , LEU C:90 , LEU C:254 , GLU C:270 , VAL C:272 , HIS C:273 , GLY C:274 , SER C:275 , ALA C:276 , PRO C:277 , ASP C:278 , ILE C:279 , ASN C:286 , IPM C:800 , K C:1001 , GOL C:1004 , HOH C:2004 , HOH C:2011 , HOH C:2014 , HOH C:2031 , HOH C:2056 , HOH C:2057 , ASN D:187 , TYR D:215 , ALA D:218 , HOH D:2029BINDING SITE FOR RESIDUE NAD C 900
32DC5SOFTWARELEU C:103 , LYS C:175 , ARG C:176 , MET C:296 , GLU C:299 , HIS C:300 , GOL C:1005BINDING SITE FOR RESIDUE MPO C 950
33DC6SOFTWAREASP C:241 , IPM C:800 , HOH C:2001 , HOH C:2002 , ASP D:217BINDING SITE FOR RESIDUE MN C 999
34DC7SOFTWAREGLY C:70 , SER C:71 , GLU C:270 , PRO C:271 , HIS C:273 , NAD C:900BINDING SITE FOR RESIDUE K C 1001
35DC8SOFTWAREGLU C:62 , ALA C:64 , THR C:266 , HOH C:2098BINDING SITE FOR RESIDUE K C 1002
36DC9SOFTWAREGLU C:155 , TYR C:157 , VAL C:183 , VAL C:191 , GLY C:192 , TRP C:195 , THR C:235 , GLY C:236 , PHE C:239 , HOH C:2043 , HOH C:2044BINDING SITE FOR RESIDUE GOL C 1003
37EC1SOFTWAREGLY C:73 , GLY C:74 , TRP C:77 , ASP C:78 , ARG C:85 , GLU C:87 , NAD C:900 , HOH C:2087 , HOH C:2118 , TYR D:215BINDING SITE FOR RESIDUE GOL C 1004
38EC2SOFTWAREMET C:296 , GLU C:299 , GLU C:312 , MPO C:950 , GOL C:1006BINDING SITE FOR RESIDUE GOL C 1005
39EC3SOFTWAREPRO C:105 , LYS C:107 , PHE C:109 , PRO C:258 , GOL C:1005 , GOL C:1007BINDING SITE FOR RESIDUE GOL C 1006
40EC4SOFTWARELYS C:107 , VAL C:108 , PHE C:109 , PRO C:251 , LEU C:292 , GOL C:1006 , HOH C:2075BINDING SITE FOR RESIDUE GOL C 1007
41EC5SOFTWAREGOL C:1008BINDING SITE FOR RESIDUE GOL C 1018
42EC6SOFTWAREGLU C:171 , ARG C:174 , GLY C:205 , ILE C:284 , SER C:330 , GOL C:1018 , HOH C:2109BINDING SITE FOR RESIDUE GOL C 1008
43EC7SOFTWAREGLU C:148 , HOH C:2110 , LYS D:159 , PHE D:194BINDING SITE FOR RESIDUE EOH C 1009
44EC8SOFTWAREGLY C:79 , LEU C:80 , ARG C:85 , HOH C:2118BINDING SITE FOR RESIDUE EOH C 1010
45EC9SOFTWARELYS C:185 , ASP C:217 , HOH C:2017 , LEU D:90 , LEU D:91 , ARG D:94 , ARG D:104 , ARG D:132 , TYR D:139 , ASP D:241 , NAD D:900 , MN D:999 , HOH D:2002 , HOH D:2016BINDING SITE FOR RESIDUE IPM D 800
46FC1SOFTWAREASN C:187 , TYR C:215 , ALA C:218 , HOH C:2027 , ILE D:11 , SER D:71 , VAL D:72 , GLY D:73 , GLY D:74 , GLU D:87 , LEU D:90 , LEU D:254 , GLU D:270 , HIS D:273 , GLY D:274 , SER D:275 , ALA D:276 , PRO D:277 , ASP D:278 , ILE D:279 , ASN D:286 , IPM D:800 , K D:1001 , GOL D:1004 , HOH D:2003 , HOH D:2006 , HOH D:2016 , HOH D:2021 , HOH D:2048 , HOH D:2067BINDING SITE FOR RESIDUE NAD D 900
47FC2SOFTWARELEU D:103 , ALA D:172 , LYS D:175 , ARG D:176 , MET D:296 , GLU D:299 , HIS D:300 , GOL D:1007BINDING SITE FOR RESIDUE MPO D 950
48FC3SOFTWAREASP C:217 , ASP D:241 , IPM D:800 , HOH D:2001 , HOH D:2002BINDING SITE FOR RESIDUE MN D 999
49FC4SOFTWAREGLY D:70 , SER D:71 , GLU D:270 , PRO D:271 , HIS D:273 , NAD D:900BINDING SITE FOR RESIDUE K D 1001
50FC5SOFTWAREGLU D:155 , TYR D:157 , VAL D:183 , VAL D:191 , GLY D:192 , TRP D:195 , THR D:235 , GLY D:236 , PHE D:239 , HOH D:2017 , HOH D:2036BINDING SITE FOR RESIDUE GOL D 1003
51FC6SOFTWARETYR C:215 , GLY D:73 , GLY D:74 , TRP D:77 , ASP D:78 , ARG D:85 , GLU D:87 , NAD D:900 , HOH D:2066BINDING SITE FOR RESIDUE GOL D 1004
52FC7SOFTWAREASP C:47 , LYS C:76 , TRP C:77 , LEU C:80 , PRO C:143 , TRP C:152 , PRO D:143 , THR D:154 , ARG D:156 , HOH D:2023BINDING SITE FOR RESIDUE GOL D 1005
53FC8SOFTWARELYS D:107 , VAL D:108 , PHE D:109 , LEU D:112 , PRO D:251 , LEU D:319 , GOL D:1008 , HOH D:2057BINDING SITE FOR RESIDUE GOL D 1006
54FC9SOFTWAREMET D:296 , GLU D:299 , MPO D:950 , GOL D:1008BINDING SITE FOR RESIDUE GOL D 1007
55GC1SOFTWAREPRO D:105 , ALA D:106 , LYS D:107 , LEU D:256 , LEU D:257 , LEU D:292 , GOL D:1006 , GOL D:1007BINDING SITE FOR RESIDUE GOL D 1008
56GC2SOFTWARESER C:253 , LEU C:254 , MET D:221 , ARG D:225BINDING SITE FOR RESIDUE EOH D 1009
57GC3SOFTWAREMET C:221 , SER D:253 , LEU D:254 , HOH D:2081 , HOH D:2082BINDING SITE FOR RESIDUE EOH D 1010

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F7I)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Glu A:142 -Pro A:143
2Glu B:142 -Pro B:143
3Glu C:142 -Pro C:143
4Glu D:142 -Pro D:143

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F7I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F7I)

(-) Exons   (0, 0)

(no "Exon" information available for 4F7I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4f7ia_ A: automated matches                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhh...hhhhhhhhhhh.eeeeee..hhhhh..hhhhhhhhhhhhhhhhh...eeeeeee....hhhhh..hhhhhh..eeeeeee..hhhhh....ee...eeeeeeeeehhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhh.eeeehhhhhhhhhhhhh....hhhhh..eee.....ee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f7i A   0 SMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPPDLGGSAGTEAFTATVLRHLAAAAL 349
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349


Chain B from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4f7ib_ B: automated matches                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhh...hhhhhhhhhhh.eeeeee..hhhhh..hhhhhhhhhhhhhhhhh...eeeeeee....hhhhh..hhhhhh..eeeeeee..hhhhh....ee...eeeeeeeeehhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhh.eeeehhhhhhhhhhhhh....hhhh.eeeee.....eeee...............hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f7i B   0 SMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPPDLGGSAGTEAFTATVLRHLAAAAL 349
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349


Chain C from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4f7ic_ C: automated matches                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhh...hhhhhhhhhhh.eeeeee..hhhhh..hhhhhhhhhhhhhhhhh...eeeeeee....hhhhh..hhhhhh..eeeeeee..hhhhh....ee...eeeeeeeeehhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhh.eeeehhhhhhhhhhhhh....hhhhh..eee.....ee.................hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4f7i C   0 SMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPPDLGGSAGTEAFTATVLRHLAAA 347
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339        


Chain D from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4f7id_ D: automated matches                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhh...hhhhhhhhhhh.eeeeee..hhhhh..hhhhhhhhhhhhhhhhh...eeeeeee....hhhhh..hhhhhh..eeeeeee..hhhhh....ee...eeeeeeeeehhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhh.eeeehhhhhhhhhhhhh....hhhhh..eee.....ee.................hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f7i D   0 SMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPPDLGGSAGTEAFTATVLRHLAAAA 348
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F7I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F7I)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    EOH  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    IPM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    K  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MPO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
    GC2  [ RasMol ]  +environment [ RasMol ]
    GC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:142 - Pro A:143   [ RasMol ]  
    Glu B:142 - Pro B:143   [ RasMol ]  
    Glu C:142 - Pro C:143   [ RasMol ]  
    Glu D:142 - Pro D:143   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4f7i
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  LEU3_THET8 | Q5SIY4
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.1.1.85
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  LEU3_THET8 | Q5SIY4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LEU3_THET8 | Q5SIY4: 1dpz 1dr0 1dr8 1g2u 1gc8 1gc9 1hex 1idm 1ipd 1osi 1osj 1xaa 1xab 1xac 1xad 2y3z 2y40 2y41 2y42 2ztw 4wuo

(-) Related Entries Specified in the PDB File

1hex 3-ISOPROPYLMALATE DEHYDROGENASE COMPLEXED WITH BETA- NICOTINAMIDE ADENINE DINUCLEOTIDE, OXIDIZED (NAD+)
2y3z STRUCTURE OF ISOPROPYLMALATE DEHYDROGENASE FROM THERMUS THERMOPHILUS
2y40 STRUCTURE OF ISOPROPYLMALATE DEHYDROGENASE FROM THERMUS THERMOPHILUS
2y41 STRUCTURE OF ISOPROPYLMALATE DEHYDROGENASE FROM THERMUS THERMOPHILUS
2y42 STRUCTURE OF ISOPROPYLMALATE DEHYDROGENASE FROM THERMUS THERMOPHILUS - COMPLEX WITH NADH AND MN
2ztw CRYSTAL STRUCTURE OF 3-ISOPROPYLMALATE DEHYDROGENASE IN COMPLEX WITH NAD(+) AND A DESIGNED INHIBITOR