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(-) Description

Title :  CRYSTAL STRUCTURE OF A SUSD HOMOLOG (BVU_2203) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.85 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  15 May 12  (Deposition) - 30 May 12  (Release) - 30 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Tpr-Like Protein, Mucin O-Glycan Binding, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Susd Homolog (Bvu_2203) From Bacteroides Vulgatus Atcc 8482 At 1. 85 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BVU_2203
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric/Biological Unit (5, 13)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4NA1Ligand/IonSODIUM ION
5PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:116 , ASP A:503 , GLN A:510 , GOL A:602 , HOH A:865 , HOH A:1212BINDING SITE FOR RESIDUE GOL A 601
2AC2SOFTWAREASN A:113 , TYR A:116 , ASN A:117 , ASP A:502 , ASP A:503 , LYS A:506 , GOL A:601BINDING SITE FOR RESIDUE GOL A 602
3AC3SOFTWAREGLY A:283 , TYR A:288 , HOH A:1205 , HOH A:1206BINDING SITE FOR RESIDUE PGE A 603
4AC4SOFTWAREHOH A:757 , HOH A:810 , HOH A:836 , HOH A:844 , HOH A:999 , HOH A:1214BINDING SITE FOR RESIDUE NA A 604
5AC5SOFTWAREGLY A:271 , LYS A:272 , GLY A:273 , HOH A:1139BINDING SITE FOR RESIDUE ACT A 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F7A)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Trp A:458 -Pro A:459
2Tyr A:473 -Pro A:474

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F7A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F7A)

(-) Exons   (0, 0)

(no "Exon" information available for 4F7A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:498
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhhh..ee..hhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh......hhhhheee......hhhhhhhhh...eehhhhhhhhhhh...hhhhhh.............................................eeeehhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....hhhhh................................hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...........................hhhhhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4f7a A  40 KEYDFQKYTTNFETIQKGIYFNYDWGEGTTWPWQTFQNLNHDmFSGYFHDFASKFSDKNTVYALEAGWTASAWNYTYNYIFPVAHKSTLITQDEAKYKHFYGATLILKVEAmHRITDTYGPIVYSKFGKNETNSVDTQEEAYKAFFDDLDKAVDALDTYLKEGGKEDGVKSINmCNCPTASRWIKFANSLRLRLAmRVSNVDKTLATSEAQKALENSYGVIESSDENIQISGKGYQNPLAGVAGWGETYmGATIASVLNGYEDPRISIYYNPATLAEHTEEYLGVPQGVYAKDGDPNYYQSYSFINTQTITASTPAVLLTAAETWFLRAEASLRGINPKNESAKQCYEAGVQTSFSQWGAGDASLYLTSKGKPTDYINYAAGPGKDmKALITTTPNFDDAVNQEEQLEKIITQKWIACWPEGmEAWAEQRRTGYPKLFKVQTNNSNGTIDTDImIRRLPFSQDDAKKDPEQYKNLCTALGGADNGGTRLWWDTGKNNF 537
                                    49        59        69        79  |     89        99       109       119       129       139       149 |     159       169       179       189       199       209   |   219       229     | 239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419      |429       439       449       459  |    469       479       489   |   499       509       519       529        
                                                                     82-MSE                                                              151-MSE                                                       213-MSE               235-MSE                                               289-MSE                                                                                                                                  426-MSE                             462-MSE                        493-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4F7A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F7A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F7A)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4F7A)

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  Cis Peptide Bonds
    Trp A:458 - Pro A:459   [ RasMol ]  
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