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(-) Description

Title :  THE CRYSTAL STRUCTURE OF 6-PHOSPHO-BETA-GLUCOSIDASE FROM STREPTOCOCCUS MUTANS UA159 IN COMPLEX WITH BETA-D-GLUCOSE-6-PHOSPHATE.
 
Authors :  K. Tan, K. Michalska, C. Hatzos-Skintges, J. Bearden, A. Joachimiak, M Center For Structural Genomics (Mcsg)
Date :  14 May 12  (Deposition) - 13 Jun 12  (Release) - 13 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, K. Michalska, C. Hatzos-Skintges, J. Bearden, A. Joachimiak
The Crystal Structure Of 6-Phospho-Beta-Glucosidase From Streptococcus Mutans Ua159 In Complex With Beta-D-Glucose-6-Phosphate.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PHOSPHO-BETA-GLUCOSIDASE
    Chains: A, B
    EC Number: 3.2.1.86
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BGL, SMU_1601
    Organism Scientific: STREPTOCOCCUS MUTANS
    Organism Taxid: 1309
    Strain: UA159

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1BG62Ligand/IonBETA-D-GLUCOSE-6-PHOSPHATE
2EDO4Ligand/Ion1,2-ETHANEDIOL
3FMT2Ligand/IonFORMIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:18 , HIS A:130 , PHE A:131 , ASN A:175 , GLU A:176 , TYR A:313 , TRP A:349 , GLU A:375 , TRP A:423 , SER A:430 , ALA A:431 , GLY A:432 , LYS A:438 , TYR A:440 , HOH A:608 , HOH A:650 , HOH A:828 , HOH A:1065 , HOH A:1090BINDING SITE FOR RESIDUE BG6 A 501
2AC2SOFTWAREHIS A:17 , ALA A:33 , MET A:36 , ARG A:45 , PHE A:131 , ALA A:431 , HOH A:649BINDING SITE FOR RESIDUE EDO A 502
3AC3SOFTWAREGLY A:27 , LYS A:28 , GLY A:29 , PRO A:95 , LYS A:96 , HOH A:876 , HOH A:1002BINDING SITE FOR RESIDUE EDO A 503
4AC4SOFTWAREASN A:233 , ASP A:306 , MET A:418 , HOH A:1206BINDING SITE FOR RESIDUE FMT A 504
5AC5SOFTWAREGLN B:18 , HIS B:130 , ASN B:175 , GLU B:176 , TYR B:313 , TRP B:349 , GLU B:375 , TRP B:423 , SER B:430 , ALA B:431 , GLY B:432 , LYS B:438 , TYR B:440 , HOH B:620 , HOH B:794 , HOH B:874 , HOH B:1106BINDING SITE FOR RESIDUE BG6 B 501
6AC6SOFTWAREHIS B:17 , ALA B:33 , MET B:36 , ARG B:45 , PHE B:131 , ALA B:431 , HOH B:675BINDING SITE FOR RESIDUE EDO B 502
7AC7SOFTWARETYR B:66 , TYR B:69 , ASP B:112 , HOH B:1089BINDING SITE FOR RESIDUE EDO B 503
8AC8SOFTWAREASN B:233 , ASP B:306BINDING SITE FOR RESIDUE FMT B 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F66)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F66)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F66)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F66)

(-) Exons   (0, 0)

(no "Exon" information available for 4F66)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:478
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4f66a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.hhhhhh...hhhhh..hhhhhh...........................hhhhhhhhhhhhhhhhh..eeeee.hhhhhh........hhhhhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee...eee...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhh....eeee....eee.................ee.....ee.....ee.hhhhhhhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhhhhhhhh....eeee......................eee...........eeehhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f66 A   0 AMSKLPENFLWGGAVAAHQLEGGWQEGGKGISVADVMTAGRHGVAREITAGVLEGKYYPNHEAIDFYHHYKEDVKLFAEMGFKCFRTSIAWTRIFPKGDEAEPNEAGLQFYDDLFDECLKYGIEPVVTLSHFELPYHLVTEYGGFTNRKVIDFFVHFAEVCFRRYKDKVKYWMTFNEINNQANYQEDFAPFTNSGIVYKEGDDREAIMYQAAHYELVASARAVKIGHAINPNLNIGCMVAMCPIYPATCNPKDILMAQKAMQKRYYFADVHVHGFYPEHIFKYWERKAIKVDFTERDKKDLFEGTVDYIGFSYYMSFVIDAHRENNPYYDYLETEDLVKNPYVKASDWDWQIDPQGLRYALNWFTDMYHLPLFIVENGFGAIDQVEADGMVHDDYRIDYLGAHIKEMIKAVDEDGVELMGYTPWGCIDLVSAGTGEMRKRYGFIYVDKDDEGKGTLKRSPKLSFNWYKEVIASNGDDI 477
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469        


Chain B from PDB  Type:PROTEIN  Length:478
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4f66b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.hhhhhh...hhhhh..hhhhhh...........................hhhhhhhhhhhhhhhhh..eeeee.hhhhhh........hhhhhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee...eee...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhh....eeee....eee.................ee.....ee.....ee.hhhhhhhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhhhhhhhh....eeee......................eee...........eeehhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f66 B   0 AMSKLPENFLWGGAVAAHQLEGGWQEGGKGISVADVMTAGRHGVAREITAGVLEGKYYPNHEAIDFYHHYKEDVKLFAEMGFKCFRTSIAWTRIFPKGDEAEPNEAGLQFYDDLFDECLKYGIEPVVTLSHFELPYHLVTEYGGFTNRKVIDFFVHFAEVCFRRYKDKVKYWMTFNEINNQANYQEDFAPFTNSGIVYKEGDDREAIMYQAAHYELVASARAVKIGHAINPNLNIGCMVAMCPIYPATCNPKDILMAQKAMQKRYYFADVHVHGFYPEHIFKYWERKAIKVDFTERDKKDLFEGTVDYIGFSYYMSFVIDAHRENNPYYDYLETEDLVKNPYVKASDWDWQIDPQGLRYALNWFTDMYHLPLFIVENGFGAIDQVEADGMVHDDYRIDYLGAHIKEMIKAVDEDGVELMGYTPWGCIDLVSAGTGEMRKRYGFIYVDKDDEGKGTLKRSPKLSFNWYKEVIASNGDDI 477
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F66)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F66)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  4f66
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8DT00_STRMU | Q8DT00: 3pn8 4f79 4gpn

(-) Related Entries Specified in the PDB File

4f79 A COMPLEX WITH SALICIN 6-PHOSPHATE