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(-) Description

Title :  THE CRYSTAL STRUCTURE OF ORNITHINE CARBAMOYLTRANSFERASE FROM BURKHOLDERIA THAILANDENSIS E264
 
Authors :  T. K. Craig, D. Fox, B. Staker, L. Stewart, Seattle Structural Genomi For Infectious Disease (Ssgcid)
Date :  07 May 12  (Deposition) - 30 May 12  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (6x)
Biol. Unit 3:  A  (3x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Carbamoyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, L. A. Gallagher, R. Patrapuvich, M. C. Clifton, A. S. Gardberg, T. E. Edwards, B. Armour, D. W. Begley, S. H. Dieterich, D. M. Dranow, J. Abendroth, J. W. Fairman, D. Fox, B. L. Staker, I. Phan, A. Gillespie, R. Choi, S. Nakazawa-Hewitt, M. T. Nguyen, A. Napuli, L. Barrett, G. W. Buchko, R. Stacy, P. J. Myler, L. J. Stewart, C. Manoil W. C. Van Voorhis
Combining Functional And Structural Genomics To Sample The Essential Burkholderia Structome.
Plos One V. 8 53851 2013
PubMed-ID: 23382856  |  Reference-DOI: 10.1371/JOURNAL.PONE.0053851

(-) Compounds

Molecule 1 - ORNITHINE CARBAMOYLTRANSFERASE 1
    Chains: A
    EC Number: 2.1.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: AVA0421
    Gene: ARGF-1, ARGF1, BTH_I0732
    Organism Scientific: BURKHOLDERIA THAILANDENSIS
    Organism Taxid: 271848
    Strain: E264 / ATCC 700388 / DSM 13276 / CIP 106301
    Synonym: OTCASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (6x): A
Biological Unit 3 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2PO47Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2PO414Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 48)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2PO442Ligand/IonPHOSPHATE ION
Biological Unit 3 (2, 24)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2PO421Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:7 , HIS A:8 , ASP A:14 , PHE A:15 , HOH A:533 , HOH A:687BINDING SITE FOR RESIDUE EDO A 401
2AC2SOFTWARESER A:56 , ARG A:58 , THR A:59 , ARG A:107 , HIS A:134 , CYS A:264 , LEU A:265 , ARG A:292 , HOH A:527 , HOH A:623BINDING SITE FOR RESIDUE PO4 A 402
3AC3SOFTWAREARG A:60 , PHE A:76BINDING SITE FOR RESIDUE PO4 A 403
4AC4SOFTWAREHIS A:73 , HOH A:557 , HOH A:601BINDING SITE FOR RESIDUE PO4 A 404
5AC5SOFTWAREARG A:86 , GLY A:87 , GLU A:88 , THR A:274 , PO4 A:406 , HOH A:570 , HOH A:606BINDING SITE FOR RESIDUE PO4 A 405
6AC6SOFTWAREGLY A:85 , ARG A:86 , GLU A:88 , PRO A:89 , VAL A:90 , ASP A:248 , GLU A:249 , THR A:274 , PO4 A:405 , HOH A:594BINDING SITE FOR RESIDUE PO4 A 406
7AC7SOFTWAREHIS A:148 , ARG A:149BINDING SITE FOR RESIDUE PO4 A 407
8AC8SOFTWAREARG A:26 , LYS A:33 , GLU A:38 , HOH A:614BINDING SITE FOR RESIDUE PO4 A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F2G)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:265 -Pro A:266

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F2G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F2G)

(-) Exons   (0, 0)

(no "Exon" information available for 4F2G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4f2ga1 A:6-150 automated matches                                                                                                                d4f2ga2 A:151-308 automated matches                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee.....ee..eehhhhhhhhhhhhh.eeeee..hhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhhh.eeeee.hhhhh.hhhhhhhhhhh.eee..hhhhhh....eeee.....hhhhhh.hhhhhh......eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f2g A   6 IRHYLQFKDFSLEDYEYVLERTGILKRKFKNYETYHPLHDRTLAMIFEKSSTRTRLSFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQDIIQRFAENSRVPVINGLTNEYHPCQVLADIFTYYEHRGPIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVVWDEAENRLHVQKALMEFLLLGRL 308
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225|      248       258       268       278       288       298       308
                                                                                                                                                                                                                                                     225|                                                                     
                                                                                                                                                                                                                                                      239
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F2G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F2G)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1pvv MOLECULAR REPLACEMENT MODEL RELATED ID: SSGCID-BUTHA.00088.A RELATED DB: TARGETTRACK