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(-) Description

Title :  CRYSTAL STRUCTURE OF THE METAL BINDING DOMAIN (MBD) OF THE STREPTOCOCCUS PNEUMONIAE D39 CU(I) EXPORTING P-TYPE ATPASE COPA WITH CU(I)
 
Authors :  Y. Fu, C. E. Dann Iii, D. P. Giedroc
Date :  07 May 12  (Deposition) - 30 Jan 13  (Release) - 06 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Cupredoxin Fold, Cu(I) Binding, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Fu, H. C. Tsui, K. E. Bruce, L. T. Sham, K. A. Higgins, J. P. Lisher, K. M. Kazmierczak, M. J. Maroney, C. E. Dann, M. E. Winkler, D. P. Giedro
A New Structural Paradigm In Copper Resistance In Streptococcus Pneumoniae.
Nat. Chem. Biol. V. 9 177 2013
PubMed-ID: 23354287  |  Reference-DOI: 10.1038/NCHEMBIO.1168

(-) Compounds

Molecule 1 - CATION-TRANSPORTING ATPASE, E1-E2 FAMILY PROTEIN
    Chains: A
    EC Number: 3.6.3.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: METAL BINDING DOMAIN (UNP RESIDUES 1-99)
    Gene: SPD0635, SPD_0635
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 373153
    Strain: D39 / NCTC 7466
    Synonym: COPA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2CU12Ligand/IonCOPPER (I) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:49 , CYS A:86 , CU1 A:102BINDING SITE FOR RESIDUE CU1 A 101
2AC2SOFTWARECYS A:49 , MET A:88 , MET A:90 , CU1 A:101 , CL A:103BINDING SITE FOR RESIDUE CU1 A 102
3AC3SOFTWARECYS A:49 , MET A:88 , MET A:90 , CU1 A:102BINDING SITE FOR RESIDUE CL A 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F2F)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:0 -Met A:1
2His A:25 -Pro A:26

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F2F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F2F)

(-) Exons   (0, 0)

(no "Exon" information available for 4F2F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:100
                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.eee..eeeeeeee...ee..eeeee....eeeeeee...hhhh.eeeehhhheeee.....eeeeee.....eeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                  4f2f A  0 GMTEIVKASLENGIQKIRIQAEKGYHPAHIQLQKGIPAEITFHRATPSNCYKEILFEEEGILEPIGVDEEKVIRFTPQELGRHEFSCGMKMQKGSYTVVE 99
                                     9        19        29        39        49        59        69        79        89        99
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4F2F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F2F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F2F)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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4f2e