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(-) Description

Title :  CRYSTAL STRUCTURE OF AMINOGLYCOSIDE ANTIBIOTIC 6'-N-ACETYLTRANSFERASE AAC(6')-IG FROM ACINETOBACTER HAEMOLYTICUS, APO
 
Authors :  P. J. Stogios, E. Evdokimova, A. Dong, G. Minasov, V. Yim, P. Courvalin, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date :  05 May 12  (Deposition) - 16 May 12  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Center For Structural Genomics Of Infectious Diseases (Csgid), Niaid, National Institute Of Allergy And Infectious Diseases, Gnat Superfamily, Gcn5-Related N-Acetyltransferase Superfamily, N- Acetyltransferase Fold, Antibiotic Resistance, Aminoglycosides, Acetyl Coenzyme A, Intracellular, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Stogios, M. L. Kuhn, E. Evdokimova, M. Law, P. Courvalin, A. Savchenko
Structural And Biochemical Characterization Of Acinetobacte Spp. Aminoglycoside Acetyltransferases Highlights Functiona And Evolutionary Variation Among Antibiotic Resistance Enzymes.
Acs Infect Dis. V. 3 132 2017
PubMed-ID: 27785912  |  Reference-DOI: 10.1021/ACSINFECDIS.6B00058

(-) Compounds

Molecule 1 - AMINOGLYCOSIDE N(6')-ACETYLTRANSFERASE TYPE 1
    Chains: A, B
    EC Number: 2.3.1.82
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AAC(6')-IG
    Organism Scientific: ACINETOBACTER HAEMOLYTICUS
    Organism Taxid: 29430
    Strain: BM2685
    Synonym: AAC(6')-IG, AMINOGLYCOSIDE RESISTANCE PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3MG2Ligand/IonMAGNESIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:114 , HOH A:340 , HOH A:341 , HOH A:342 , HOH A:343BINDING SITE FOR RESIDUE MG A 201
2AC2SOFTWAREPRO A:84 , ALA A:85BINDING SITE FOR RESIDUE CL A 202
3AC3SOFTWARETRP A:22 , GLU A:32 , GLU A:78 , HOH A:333BINDING SITE FOR RESIDUE GOL A 203
4AC4SOFTWAREGLU B:78 , ASP B:114 , HOH B:333 , HOH B:336 , HOH B:337 , HOH B:339BINDING SITE FOR RESIDUE MG B 201
5AC5SOFTWAREGLY B:79 , ILE B:80BINDING SITE FOR RESIDUE CL B 202
6AC6SOFTWAREALA B:115 , ALA B:116 , ASN B:119 , HOH B:308BINDING SITE FOR RESIDUE CL B 203
7AC7SOFTWAREARG B:18 , TRP B:22BINDING SITE FOR RESIDUE GOL B 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F0Y)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:72 -Pro A:73
2Ser B:72 -Pro B:73

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F0Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F0Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4F0Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains d4f0ya_ A: automated matches                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhh...eeeeeeee..eeeeeeeeeee...........eeeeeeeee.hhhh..hhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhh...eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f0y A   1 MNIKPASEASLKDWLELRNKLWSDSEASHLQEMHQLLAEKYALQLLAYSDHQAIAMLEASIRFEYVNGTETSPVGFLEGIYVLPAHRRSGVATMLIRQAEVWAKQFSCTEFASDAALDNVISHAMHRSLGFQETEKVVYFSKKID 145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     


Chain B from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains d4f0yb_ B: automated matches                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhh..hhhhhhhhhhhhhh...eeeeeee....eeeeeeeeee...........eeeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f0y B   1 MNIKPASEASLKDWLELRNKLWSDSEASHLQEMHQLLAEKYALQLLAYSDHQAIAMLEASIRFEYVNGTETSPVGFLEGIYVLPAHRRSGVATMLIRQAEVWAKQFSCTEFASDAALDNVISHAMHRSLGFQETEKVVYFSKKID 145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F0Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F0Y)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AAC6_ACIHA | Q44057: 4evy

(-) Related Entries Specified in the PDB File

4evy CRYSTAL STRUCTURE OF AMINOGLYCOSIDE ANTIBIOTIC 6'-N- ACETYLTRANSFERASE AAC(6')-IG FROM ACINETOBACTER HAEMOLYTICUS IN COMPLEX WITH TOBRAMYCIN RELATED ID: CSGID-IDP91868 RELATED DB: TARGETTRACK