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(-) Description

Title :  HUMAN ARTD15/PARP16 IN COMPLEX WITH 3-AMINOBENZAMIDE
 
Authors :  T. Karlberg, A. G. Thorsell, A. Kallas, H. Schuler, Structural Genomi Consortium (Sgc)
Date :  04 May 12  (Deposition) - 13 Jun 12  (Release) - 15 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Adp-Ribose, Parp16, Artd15, Structural Genomics, Structural Genomics Consortium, Sgc, Artd Transferase Domain, Adp- Ribosylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Karlberg, A. G. Thorsell, A. Kallas, H. Schuler
Crystal Structure Of Human Adp-Ribose Transferase Artd15/Parp16 Reveals A Novel Putative Regulatory Domain.
J. Biol. Chem. V. 287 24077 2012
PubMed-ID: 22661712  |  Reference-DOI: 10.1074/JBC.M112.379289

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 16
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21(DE3) R3 PRARE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: C15ORF30, PARP16
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARP-16

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
13AB1Ligand/Ion3-AMINOBENZAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
13AB1Ligand/Ion3-AMINOBENZAMIDE
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
13AB-1Ligand/Ion3-AMINOBENZAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:53 , HIS A:152 , GLY A:153 , TYR A:182 , LEU A:183 , THR A:184 , ALA A:190 , TYR A:193 , TYR A:254BINDING SITE FOR RESIDUE 3AB A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F0D)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Arg A:41 -Pro A:42
2Gly A:76 -Asp A:77
3Asp A:132 -Pro A:133
4Leu A:167 -His A:168

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F0D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F0D)

(-) Exons   (0, 0)

(no "Exon" information available for 4F0D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhh.....hhhhhhhhhhh..hhhhhhh.....hhhhhhhhhhhh....eeeee..hhhhhhhhhhh...........eeeeeee..hhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh............eee..hhhhhhh....ee.........eeeeeeeeeee......eee.hhh.eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f0d A   4 MGWAAAREAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLPNLKELLQSSGDNHKRAWDLVSWILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPAPDFLFEIEYFDPANAKFYETKGERDLIYAFHGSRLENFHSIIHNGLHCHKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDKYFVVTNNQLLRVKYLLVYSQ 273
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163      |175       185       195       205       215      |255       265        
                                                                                                                                                                                                170|                                              222|                    
                                                                                                                                                                                                 173                                               253                    


Chain B from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh......hhhhhhhhhh.....eeehhhhhh..................eee.....eeee.hhhhhhhhhh......hhhhhh.................eeeeeee..hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f0d B   4 MGWAAAREAAGRDMLAADLRCSLFASALQSYKRFEALLADASKLPNLKKRAWDLVSWILSSKVIHSAGKAEFEKIQKLTGAPHTPVPAPDFLFEIEYFYAFHGSRLENFHSIIHNTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCETNNQLLRVKYLLVYSQ 273
                                    13        23        33  ||    61       |81        91  ||   103       113       123       150       160    || 185       195       205       215||     266       
                                                           36|            69|            94|                               131|             165|                                216|               
                                                            55             80             97                                149              181                                 258
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4F0D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F0D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F0D)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
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