4EXV - JenaLib

Title :   STRUCTURE OF KLUYVEROMYCES LACTIS HSV2P

Authors :   S. Baskaran, J. H. Hurley

Date :   01 May 12 (Deposition) - 04 Jul 12 (Release) - 12 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym./Biol. Unit : A

Keywords :   Proppin, Wd-Repeat, Phosphoinosides, Phosphatidylinositol, Phosphate Binding, Autophagy, Atg2, Atg9, Atg21, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Baskaran, M. J. Ragusa, E. Boura, J. H. Hurley
Two-Site Recognition Of Phosphatidylinositol 3-Phosphate By Proppins In Autophagy.
Mol. Cell V. 47 339 2012
PubMed-ID: 22704557 | Reference-DOI: 10.1016/J.MOLCEL.2012.05.027

Compounds

Molecule 1 - SVP1-LIKE PROTEIN 2
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGST2
	Expression System Strain	:	BL21-DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	HSV2, KLLA0E15972G
	Organism Common	:	YEAST
	Organism Scientific	:	KLUYVEROMYCES LACTIS
	Organism Taxid	:	284590
	Strain	:	ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:178 , ALA A:179 , ASN A:180 , SER A:198 , ARG A:205	BINDING SITE FOR RESIDUE SO4 A 501
2	AC2	SOFTWARE	ARG A:220 , SER A:243 , LYS A:245 , THR A:247 , HIS A:249 , LYS A:285	BINDING SITE FOR RESIDUE SO4 A 502
3	AC3	SOFTWARE	HIS A:63 , SER A:104 , ARG A:105	BINDING SITE FOR RESIDUE SO4 A 503

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....eeeee...eeeeee.....eeeeee......eee.....eeeee...eeeeee....eeeeeee....eeeeeee..eeeeee..eeeeee...........ee....eeee..eeeee......eeeeee........eeee.....eeeeee.....eeeeee....eeeeee.....eeeeee.......eeeeee.....eeeeee...eeeeee..hhhhhhh.............eeee.......eeeeee..eeeeee....eeeeeeeeee....eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4exv A  15 NPIVDYEFNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTIRMLHRTNYIAFVSTELLHIWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPWNKITEDIKFGGVCEFANGLLVYSNEFNLGQIHVTRLQTDAEQGVLVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVVSDKWTLHVFEVFNDAENKRHVLKDWINIEWSICNFKLKVSNDCKIAWISDTGLVIVWPNRRLADTFKLNYNDDEHVWWLQLNQRNEIPL 339
                                    24        34        44        54        64        76        86        96       106       116       126       136       146       156       166||     180       190       200       210       220       230       240       250       260       270|      285 ||    298       308       318       328       338 
                                                                                     73|                                                                                        167|                                                                                               270|        287|                                                
                                                                                      76                                                                                         172                                                                                                276         291

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

Visualization

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	Ligands, Modified Residues, Ions
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:165 - Glu A:166	[ RasMol ]
		His A:43 - Pro A:44	[ RasMol ]

Still Images

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	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
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	4exv
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Description