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(-) Description

Title :  CRYSTAL STRUCTURE OF FABH FROM MICROCOCCUS LUTEUS
 
Authors :  J. H. Pereira, E. -B. Goh, J. D. Keasling, H. R. Beller, P. D. Adams
Date :  27 Apr 12  (Deposition) - 03 Oct 12  (Release) - 03 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Synthase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Pereira, E. B. Goh, J. D. Keasling, H. R. Beller, P. D. Adams
Structure Of Fabh And Factors Affecting The Distribution Of Branched Fatty Acids In Micrococcus Luteus.
Acta Crystallogr. , Sect. D V. 68 1320 2012
PubMed-ID: 22993086  |  Reference-DOI: 10.1107/S0907444912028351

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3
    Chains: A, B, C, D, E, F
    EC Number: 2.3.1.180
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FABH, HMPREF0569_0014, MLUT_09310
    Organism Scientific: MICROCOCCUS LUTEUS NCTC 2665
    Organism Taxid: 465515
    Strain: ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM AC-2230
    Synonym: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE III, BETA- KETOACYL-ACP SYNTHASE III

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4EWP)

(-) Sites  (0, 0)

(no "Site" information available for 4EWP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EWP)

(-) Cis Peptide Bonds  (19, 19)

Asymmetric Unit
No.Residues
1Thr A:98 -Pro A:99
2Thr A:112 -Pro A:113
3Gly A:339 -Leu A:340
4Thr B:98 -Pro B:99
5Thr B:112 -Pro B:113
6Gly B:339 -Leu B:340
7Thr C:98 -Pro C:99
8Thr C:112 -Pro C:113
9Ser C:223 -Ala C:224
10Gly C:339 -Leu C:340
11Thr D:98 -Pro D:99
12Thr D:112 -Pro D:113
13Gly D:339 -Leu D:340
14Thr E:98 -Pro E:99
15Thr E:112 -Pro E:113
16Gly E:339 -Leu E:340
17Thr F:98 -Pro F:99
18Thr F:112 -Pro F:113
19Gly F:339 -Leu F:340

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EWP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EWP)

(-) Exons   (0, 0)

(no "Exon" information available for 4EWP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4ewpa1 A:2-185 automated matches                                                                                                                                                       d4ewpa2 A:186-350 automated matches                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeee....eeehhhhh.....hhhhhhhhhh..eee......hhhhhhhhhhhhhhhhh..hhhhh.eeeee.........hhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhhh......hhhhh.eeeeeeeeeee........eeee.hhhh..eee..hhhhhhhhhhhhhhhh...............eeehhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeee...hhhhhhhhhhhh......ee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewp A   2 TVTLKQHERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLSDVVDPTDRSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGPSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRIIDEFAKQLKLPESVVVARDIADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGLVYGAQVVRLP 350
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341         


Chain B from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4ewpb1 B:2-185 automated matches                                                                                                                                                       d4ewpb2 B:186-350 automated matches                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeee....eee.hhhhhhhh.hhhhhhhhhh..eee......hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhhh......hhhhh.eeeeeeeeeee........eeee.hhhh..eee..hhhhhhhhhhhhhhhh...............eeehhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeee...hhhhhhhhhhhh......ee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewp B   2 TVTLKQHERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLSDVVDPTDRSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGPSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRIIDEFAKQLKLPESVVVARDIADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGLVYGAQVVRLP 350
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341         


Chain C from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4ewpc1 C:2-185 automated matches                                                                                                                                                       d4ewpc2 C:186-350 automated matches                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeee....eee.hhhhhhhh.hhhhhhhhhh..eee......hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhhh......hhhhh.eeeeeeeeeee........eeee.hhhh..eee..hhhhhhhhhhhhhhhh...............eeehhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeee...hhhhhhhhhhhh......ee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewp C   2 TVTLKQHERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLSDVVDPTDRSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGPSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRIIDEFAKQLKLPESVVVARDIADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGLVYGAQVVRLP 350
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341         


Chain D from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4ewpd1 D:2-185 automated matches                                                                                                                                                       d4ewpd2 D:186-350 automated matches                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeee....eee.hhh......hhhhhhhhhh..eee......hhhhhhhhhhhhhhhhh..hhhhh.eeeee.........hhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhhh......hhhhh.eeeeeeeeeee........eeee.hhhh..eee..hhhhhhhhhhhhhhhh...............eeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhh......ee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewp D   2 TVTLKQHERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLSDVVDPTDRSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGPSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRIIDEFAKQLKLPESVVVARDIADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGLVYGAQVVRLP 350
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341         


Chain E from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4ewpe1 E:2-185 automated matches                                                                                                                                                       d4ewpe2 E:186-350 automated matches                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeee...eeee.hhh......hhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhhh......hhhhh.eeeeeeeeeee........eeee.hhhh..eee..hhhhhhhhhhhhhhhh...............eeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhh......ee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewp E   2 TVTLKQHERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLSDVVDPTDRSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGPSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRIIDEFAKQLKLPESVVVARDIADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGLVYGAQVVRLP 350
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341         


Chain F from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4ewpf1 F:2-185 automated matches                                                                                                                                                       d4ewpf2 F:186-350 automated matches                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeee...eeee.hhh......hhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhh..hhhhh.eeeee.........hhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.......hhhhh.eeeeeeeeeee........eeee.hhhh..eee..hhhhhhhhhhhhhhhh...............eeehhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeee...hhhhhhhhhhhh......ee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewp F   2 TVTLKQHERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLSDVVDPTDRSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGPSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRIIDEFAKQLKLPESVVVARDIADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGLVYGAQVVRLP 350
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: Thiolase-like (231)
(-)
Superfamily: Thiolase-like (231)
(-)
Family: automated matches (108)
(-)
Protein domain: automated matches (108)
(-)
Micrococcus luteus [TaxId: 465515] (1)
1ad4ewpa1A:2-185
1bd4ewpa2A:186-350
1cd4ewpf1F:2-185
1dd4ewpf2F:186-350
1ed4ewpb1B:2-185
1fd4ewpb2B:186-350
1gd4ewpc1C:2-185
1hd4ewpc2C:186-350
1id4ewpd1D:2-185
1jd4ewpd2D:186-350
1kd4ewpe1E:2-185
1ld4ewpe2E:186-350

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EWP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EWP)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:339 - Leu A:340   [ RasMol ]  
    Gly B:339 - Leu B:340   [ RasMol ]  
    Gly C:339 - Leu C:340   [ RasMol ]  
    Gly D:339 - Leu D:340   [ RasMol ]  
    Gly E:339 - Leu E:340   [ RasMol ]  
    Gly F:339 - Leu F:340   [ RasMol ]  
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    Thr C:98 - Pro C:99   [ RasMol ]  
    Thr D:112 - Pro D:113   [ RasMol ]  
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    Thr E:98 - Pro E:99   [ RasMol ]  
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(-) Related Entries Specified in the PDB File

2ebd CRYSTAL STRUCTURE OF 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE III FROM AQUIFEX AEOLICUS VF5