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Title :   THE CRYSTAL STRUCTURE OF BETA-LACTAMASE FROM SPHAEROBACTER THERMOPHILUS DSM 20745

Authors :   R. Wu, S. Clancy, A. Joachimiak, Midwest Center For Structural Gen (Mcsg)

Date :   26 Apr 12 (Deposition) - 19 Sep 12 (Release) - 19 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Aba-Sandwich, Structural Genomics, Midwest Center For Structural Genomics (Mcsg), Psi-Biology, Cytoplasmic, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Wu, S. Clancy, A. Joachimiak
The Crystal Structure Of Beta-Lactamase From Sphaerobacter Thermophilus Dsm 20745
To Be Published
PubMed: search

Compounds

Molecule 1 - BETA-LACTAMASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	STHE_2032
	Organism Scientific	:	SPHAEROBACTER THERMOPHILUS
	Organism Taxid	:	479434
	Strain	:	DSM 20745

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 26)

Asymmetric Unit (3, 26)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	MSE	20	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 7)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 7)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 6)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	1	Ligand/Ion	SULFATE ION

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:49 , SER A:110 , LYS A:213 , THR A:214 , GLY A:215 , SER A:216 , HOH A:553 , HOH A:570	BINDING SITE FOR RESIDUE SO4 A 301
2	AC2	SOFTWARE	LEU A:89 , HIS A:90 , GLU C:156 , TRP C:158	BINDING SITE FOR RESIDUE SO4 A 302
3	AC3	SOFTWARE	SER B:49 , SER B:110 , LYS B:213 , THR B:214 , GLY B:215 , SER B:216 , HOH B:462	BINDING SITE FOR RESIDUE SO4 B 301
4	AC4	SOFTWARE	SER C:49 , SER C:110 , ARG C:197 , LYS C:213 , THR C:214 , GLY C:215 , SER C:216 , HOH C:475	BINDING SITE FOR RESIDUE SO4 C 301
5	AC5	SOFTWARE	ARG C:143 , LYS C:146 , GLY C:147 , ARG C:148	BINDING SITE FOR RESIDUE ACY C 302
6	AC6	SOFTWARE	SER D:49 , SER D:110 , LYS D:213 , THR D:214 , GLY D:215 , SER D:216 , HOH D:408	BINDING SITE FOR RESIDUE SO4 D 301

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...eeeeeee.....eeee.....ee.hhhhhhhhhhhhhhhhhh.......eee.hhhhh.....hhhhh....eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.......................eehhhhhhhhhhhhhh....hhhhhhhhhhhhh..................eeeeeeeee..eeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewf A   5 TIDWSGVAAAVAAAEATGGTVGATIVAPGGETFRHNGDRRFRAASTVKIPLmIAVYRAVDAGERALTDRIVLRAADKAPGSGVLLHLHDGLELTLEDLVYLTISISDNTATNLLIDLVGLDAVNDVIASLGmRDSNLSRKmKGRPALPDEPENWATPDDYALAVQALLEGRAASQESCTAmLAmLEKQQNPRRIGRYVPEGEGIRWGSKTGSLTGVVNDVGFITTPAGTLVVAVFTENLPDLHAGEQAIGDITRAALQATGLIPPGAA 272
                                    14        24        34        44        54 |      64        74        84        94       104       114       124       134 |     144|      154       164       174       184|  |   194       204       214       224       234       244       254       264        
                                                                              56-MSE                                                                         136-MSE  145-MSE                                 185-MSE                                                                                   
                                                                                                                                                                                                                 188-MSE

Chain B from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeeeeee.....eeee.....ee.hhhhhhhhhhhhhhhhhh.......eee.hhhhh.....hhhhh....eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......................eehhhhhhhhhhhhhh....hhhhhhhhhhhhh..................eeeeeeeee..eeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewf B   6 IDWSGVAAAVAAAEATGGTVGATIVAPGGETFRHNGDRRFRAASTVKIPLmIAVYRAVDAGERALTDRIVLRAADKAPGSGVLLHLHDGLELTLEDLVYLTISISDNTATNLLIDLVGLDAVNDVIASLGmRDSNLSRKmKGRPALPEPENWATPDDYALAVQALLEGRAASQESCTAmLAmLEKQQNPRRIGRYVPEGEGIRWGSKTGSLTGVVNDVGFITTPAGTLVVAVFTENLPDLHAGEQAIGDITRAALQATGLIPP 269
                                    15        25        35        45        55|       65        75        85        95       105       115       125       135|      145      |156       166       176       186 |     196       206       216       226       236       246       256       266   
                                                                             56-MSE                                                                         136-MSE  145-MSE152|                            185-MSE                                                                                
                                                                                                                                                                             154                               188-MSE

Chain C from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeeeeee.....eeee.....ee.hhhhhhhhhhhhhhhhhh.......eee.hhhhh.....hhhhh....eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.......................eehhhhhhhhhhhhhh....hhhhhhhhhhhhh..................eeeeeeeee..eeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewf C   6 IDWSGVAAAVAAAEATGGTVGATIVAPGGETFRHNGDRRFRAASTVKIPLmIAVYRAVDAGERALTDRIVLRAADKAPGSGVLLHLHDGLELTLEDLVYLTISISDNTATNLLIDLVGLDAVNDVIASLGmRDSNLSRKmKGRPALPDEPENWATPDDYALAVQALLEGRAASQESCTAmLAmLEKQQNPRRIGRYVPEGEGIRWGSKTGSLTGVVNDVGFITTPAGTLVVAVFTENLPDLHAGEQAIGDITRAALQATGLIPPG 270
                                    15        25        35        45        55|       65        75        85        95       105       115       125       135|      145       155       165       175       185  |    195       205       215       225       235       245       255       265     
                                                                             56-MSE                                                                         136-MSE  145-MSE                                 185-MSE                                                                                 
                                                                                                                                                                                                                188-MSE

Chain D from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...eeeeeee.....eeee.....ee.hhhhhhhhhhhhhhhhhh.......eee.hhhhh.....hhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................eehhhhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhhh......eeeeeeeee..eeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewf D   5 TIDWSGVAAAVAAAEATGGTVGATIVAPGGETFRHNGDRRFRAASTVKIPLmIAVYRAVDAGERALTDRIVLRAADKAPGSGVLLHLHDGLELTLEDLVYLTISISDNTATNLLIDLVGLDAVNDVIASLGmRDSNLSRKmKGRPDEPENWATPDDYALAVQALLEGRAASQESCTAmLAmLEKQQNPRRIGRYVPEGEGIRWGSKTGSLTGVVNDVGFITTPAGTLVVAVFTENLPDLHAGEQAIGDITRAALQATGLIPPG 270
                                    14        24        34        44        54 |      64        74        84        94       104       114       124       134 |     144|   || 157       167       177       187|      197       207       217       227       237       247       257       267   
                                                                              56-MSE                                                                         136-MSE  145-MSE|                             185-MSE                                                                                 
                                                                                                                                                                           153                                188-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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