4EW6 - JenaLib

Title :   CRYSTAL STRUCTURE OF D-GALACTOSE-1-DEHYDROGENASE PROTEIN FROM RHIZOBIUM ETLI

Authors :   S. Eswaramoorthy, S. C. Almo, S. Swaminathan, New York Structural G Research Consortium (Nysgrc)

Date :   26 Apr 12 (Deposition) - 16 May 12 (Release) - 16 May 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Nysgrc, Psi-Biology, Structural Genomics, New York Structural Genomics Research Consortium, Two Domain, Gfo/Idh/Moca Family, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Eswaramoorthy, S. Chamala, B. Evans, R. Foti, A. Gizzi, B. Hillerich, A. Kar, J. Lafleur, R. Seidel, G. Villigas, W. Zencheck, S. C. Almo, S. Swaminathan
Crystal Structure Of D-Galactose-1-Dehydrogenase Protein From Rhizobium Etli
To Be Published
PubMed: search

Compounds

Molecule 1 - D-GALACTOSE-1-DEHYDROGENASE PROTEIN
	Chains	:	A
	EC Number	:	1.1.1.48
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET3A
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	GAL, RHE_CH01458
	Organism Scientific	:	RHIZOBIUM ETLI
	Organism Taxid	:	347834
	Strain	:	CFN 42 / ATCC 51251

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 5)

Asymmetric Unit (1, 5)

No.	Name	Count	Type	Full Name
1	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..hhhhhhhhhhhhhhh..eeeeeee.........eee.hhhhhhhhh....eeee..hhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhh..eee.hhhhhh.hhhhhhhhhhh..eeeeeeeee.hhhhhh...hhhhh.....hhhhhhhhhhhhhhhh....eeeeeeeeeee......eeeeeee.....eeeeeee.......eeeeeeee....eeee....eeee........hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ew6 A  -4 YFQSmSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAmLDAEPSIDAVSLCmPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSRYAPAVEAAKAFLASTTIKSVHVIWKEDVRHWHPNQDWIWQAGGLGVFDPGINALSIVTHILPRPVFITGAVLEFPENRDAPIAADIHFRDADGLPVHAEFDWRQTGKQSWDIVAETAAGQmVLSEGGAKLSIDGRLTEPEQEYPSLYRRFAEIIKAGKSDVDVAPLRHVADAFmLGKRKFVEAFH 307
                               ||    6        16        26        36        46      | 56        66|       76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236    |  246       256||     268       278       288       298         
                              -1|                                                  53-MSE        67-MSE                                                                                                                                                                       241-MSE         257|                                 296-MSE       
                                1-MSE                                                                                                                                                                                                                                                          260

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

Visualization

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	Sites
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	Cis Peptide Bonds
		Ala A:238 - Gly A:239	[ RasMol ]
		Asn A:197 - Arg A:198	[ RasMol ]
		Lys A:90 - Pro A:91	[ RasMol ]

Biological Unit
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Still Images

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Description