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(-) Description

Title :  CRYSTAL STRUCTURE OF YFKJ FROM BACILLUS SUBTILIS
 
Authors :  X. F. Cao, X. D. Su
Date :  24 Apr 12  (Deposition) - 24 Oct 12  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tyrosine Phosphatase, Dephosphorylation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. F. Cao, X. D. Su
Crystal Structure Of Yfkj From Bacillus Subtilis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE YFKJ
    Chains: A, B
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YFKJ, BSU07880
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: LMPTP

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1K2Ligand/IonPOTASSIUM ION
2NA2Ligand/IonSODIUM ION
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:8 , LEU A:9 , GLY A:10 , ASN A:11 , ILE A:12 , CYS A:13 , ARG A:14 , ASP A:125 , TYR A:127 , ARG B:-2BINDING SITE FOR RESIDUE PO4 A 201
2AC2SOFTWARELEU A:79 , ASP A:80 , PHE A:82 , HIS A:107 , HOH A:308BINDING SITE FOR RESIDUE NA A 202
3AC3SOFTWAREASN A:11 , SER A:39 , LEU A:70BINDING SITE FOR RESIDUE K A 203
4AC4SOFTWAREARG A:-2 , CYS B:8 , LEU B:9 , GLY B:10 , ASN B:11 , ILE B:12 , CYS B:13 , ARG B:14 , ASP B:125 , TYR B:127BINDING SITE FOR RESIDUE PO4 B 201
5AC5SOFTWARELEU B:79 , ASP B:80 , PHE B:82 , HIS B:107 , HOH B:319 , HOH B:340 , HOH B:365BINDING SITE FOR RESIDUE NA B 202
6AC6SOFTWAREASN B:11 , SER B:39 , LEU B:70BINDING SITE FOR RESIDUE K B 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ETM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:116 -Asp A:117
2Asp A:119 -Leu A:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ETM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ETM)

(-) Exons   (0, 0)

(no "Exon" information available for 4ETM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains --d4etma1 A:-3-156 automated matches                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeeee....hhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhh............hhhhhhhh.eeee.hhhhhhhhhhhhh......eee.hhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4etm A  -7 GQGRGSMISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGFKNTSHIKRLLDYVEDSDLADVPDPYYTGNFEEVCQLIKTGCEQLLASIQKEKQL 156
                             ||      4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154  
                             ||                                                                                                                                                               
                            -6|                                                                                                                                                               
                             -3                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains d4etmb_ B: automated matches                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhh...........hhhhhhhh.eeee.hhhhhhhhhhhh.......eee.hhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4etm B  -3 GRGSMISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGFKNTSHIKRLLDYVEDSDLADVPDPYYTGNFEEVCQLIKTGCEQLLASIQKEKQ 155
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ETM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ETM)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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