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(-) Description

Title :  CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA GH3.11 (JAR1) IN COMPLEX WITH JA-ILE
 
Authors :  C. S. Westfall, C. Zubieta, J. Herrmann, U. Kapp, M. H. Nanao, J. M. Jez
Date :  17 Apr 12  (Deposition) - 20 Jun 12  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Anl Adenylating Enzyme, Acyl Acid-Amido Synthetase, Adenylation, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. S. Westfall, C. Zubieta, J. Herrmann, U. Kapp, M. H. Nanao, J. M. Jez
Structural Basis For Prereceptor Modulation Of Plant Hormones By Gh3 Proteins.
Science V. 336 1708 2012
PubMed-ID: 22628555  |  Reference-DOI: 10.1126/SCIENCE.1221863

(-) Compounds

Molecule 1 - JASMONIC ACID-AMIDO SYNTHETASE JAR1
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: JAR1, FIN219, AT2G46370, F11C10.6
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: JASMONATE-AMINO ACID SYNTHETASE JAR1, PROTEIN FAR-RED INSENSITIVE 219, PROTEIN JASMONATE RESISTANT 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1JAI1Ligand/IonN-({(1R,2R)-3-OXO-2-[(2Z)-PENT-2-EN-1-YL]CYCLOPENTYL}ACETYL)-L-ISOLEUCINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1JAI1Ligand/IonN-({(1R,2R)-3-OXO-2-[(2Z)-PENT-2-EN-1-YL]CYCLOPENTYL}ACETYL)-L-ISOLEUCINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1JAI2Ligand/IonN-({(1R,2R)-3-OXO-2-[(2Z)-PENT-2-EN-1-YL]CYCLOPENTYL}ACETYL)-L-ISOLEUCINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:101 , THR A:164 , ALA A:165 , THR A:166 , PHE A:223 , ILE A:304 , GLY A:331 , SER A:332 , SER A:333 , TRP A:336 , HOH A:718 , HOH A:808 , HOH A:1071BINDING SITE FOR RESIDUE JAI A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EPL)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp A:471 -Pro A:472

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EPL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EPL)

(-) Exons   (0, 0)

(no "Exon" information available for 4EPL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:552
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.....hhhhhhhhh...hhhhhhhhhhhhhh.............eeeeeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhh......eeeee......ee.....eeehhhhhhhh..hhhhhhhhhh.....hhhhhh..hhhhhhhhhhhhhhhh...eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhh.....eeee.hhhhhhhhhhhhhhhh...eee..eee..eeeee............eee.....eeeeee....ee.hhh....eeeeeee.......eeeeeeeeeeeee..eeeeeeeee............hhhhhhhhhhhhhhhhhh....eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhh.hhhhhhhhhh......eeeee..hhhhhhhhhhhh...........hhhhhhhhhh.eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4epl A   7 TFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNDPEEAFKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGKMPRCVKPSNAKVLQILCENVVSSYFSTAF 575
                                    16        26        36        46    ||  60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360     ||377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537 ||    553       563       573  
                                                                       51|                                                                                                                                                                                                                                                                                                                   366|                                                                                                                                                                  539|                             
                                                                        56                                                                                                                                                                                                                                                                                                                    374                                                                                                                                                                   546
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EPL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EPL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EPL)

(-) Gene Ontology  (14, 14)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAR1_ARATH | Q9SKE2: 5ech 5eci 5eck 5ecl 5ecm 5ecn 5eco 5ecp 5ecq 5ecr 5gzz

(-) Related Entries Specified in the PDB File

4epm 4eql 4ewv