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(-) Description

Title :  CRYSTAL STRUCTURE OF OXIDIZED HUMAN NM23-H1
 
Authors :  M. -S. Kim, D. -H. Shin
Date :  13 Apr 12  (Deposition) - 27 Mar 13  (Release) - 27 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Ferredoxin-Like/Alpha, Beta Proteins, Nucleoside Diphosphate Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. -S. Kim, J. Jeong, J. Jeong, D. -H. Shin, K. -J. Lee
Structure Of Nm23-H1 Under Oxidative Conditions
Acta Crystallogr. , Sect. D V. 69 669 2013
PubMed: search  |  Reference-DOI: 10.1107/S0907444913001194

(-) Compounds

Molecule 1 - NUCLEOSIDE DIPHOSPHATE KINASE A
    ChainsA, B
    EC Number2.7.4.6
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneNME1, NDPKA, NM23
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymNDK A, NDP KINASE A, GRANZYME A-ACTIVATED DNASE, GAAD, METASTASIS INHIBITION FACTOR NM23, TUMOR METASTATIC PROCESS- ASSOCIATED PROTEIN, NM23-H1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (3x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1PO46Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:12 , TYR A:52 , HIS A:118BINDING SITE FOR RESIDUE PO4 A 201
2AC2SOFTWARELYS B:12 , TYR B:52 , HIS B:118 , HOH B:304BINDING SITE FOR RESIDUE PO4 B 201

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:4 -A:145
2B:4 -B:145

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ENO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ENO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ENO)

(-) Exons   (0, 0)

(no "Exon" information available for 4ENO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains d4enoa_ A: Nucleoside diphosphate kinase, NDK                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eeeeeehhhhhhh.hhhhhhhhhhhhh.eeeeeeee..hhhhhhhhhhhhh...hhhhhhhhhhh..eeeeeee..hhhhhhhhhhh..........hhhhhhh.......eee..hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eno A   1 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIY 151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 

Chain B from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains d4enob_ B: Nucleoside diphosphate kinase, NDK                                                                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eeeeeehhhhhhh.hhhhhhhhhhhhh.eeeeeeee..hhhhhhhhhhhhh...hhhhhhhhhhh..eeeeeee..hhhhhhhhhhh..........hhhhhhh.......eee..hhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eno B   1 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNW 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ENO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ENO)

(-) Gene Ontology  (61, 61)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NDKA_HUMAN | P155311jxv 1ucn 2hvd 2hve 3l7u

(-) Related Entries Specified in the PDB File

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