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(-) Description

Title :  CRYSTAL STRUCTURE OF S. POMBE ATL1 IN COMPLEX WITH DAMAGED DNA CONTAINING O6-PROPYLGUANINE
 
Authors :  J. L. Tubbs, A. S. Arvai, J. A. Tainer
Date :  13 Apr 12  (Deposition) - 20 Jun 12  (Release) - 01 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.04
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Alkyltransferase, Dna Repair, Nucleotide Excision Repair, Ner, Base Repair, Dna, Dna Damage, Guanine, Alkylation, Dna Binding Protein- Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. F. Latypov, J. L. Tubbs, A. J. Watson, A. S. Marriott, G. Mcgown, M. Thorncroft, O. J. Wilkinson, P. Senthong, A. Butt, A. S. Arvai, C. L. Millington, A. C. Povey, D. M. Williams, M. F. Santibanez-Koref, J. A. Tainer, G. P. Margison
Atl1 Regulates Choice Between Global Genome And Transcription-Coupled Repair Of O(6)-Alkylguanines.
Mol. Cell V. 47 50 2012
PubMed-ID: 22658721  |  Reference-DOI: 10.1016/J.MOLCEL.2012.04.028

(-) Compounds

Molecule 1 - ALKYLTRANSFERASE-LIKE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ATL1, SPAC1250.04C
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Strain: 972 / ATCC 24843
 
Molecule 2 - DNA (5'-D(*GP*CP*CP*AP*TP*GP*(6PO)P*CP*TP*AP*GP*TP*A)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3')
    Chains: C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
16PO1Mod. Nucleotide9-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-6-PROPOXY-9H-PURIN-2-AMINE

(-) Sites  (0, 0)

(no "Site" information available for 4ENK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ENK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ENK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ENK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ENK)

(-) Exons   (0, 0)

(no "Exon" information available for 4ENK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.....eehhhhhhhh.....hhhhhhhhhh...........ee..............hhhhhhhhhh...............hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4enk A   1 MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKDRLEEEGVEIYQTSLGEYKLNLPEYMWKP 108
                                    10        20        30        40        50        60        70        80        90       100        


Chain B from PDB  Type:DNA  Length:13
                                             
                 4enk B   1 GCCATGgCTAGTA  13
                                  | 10   
                                  7-6PO  


Chain C from PDB  Type:DNA  Length:13
                                             
                 4enk C  14 CTACTAGCCATGG  26
                                    23
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ENK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ENK)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (10, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATL1_SCHPO | Q9UTN9: 3gva 3gx4 3gyh 4enj 4enm 4enn 4hdu 4hdv

(-) Related Entries Specified in the PDB File

4enj 4enm 4enn