4ENA - JenaLib

Title :   CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH, SOAKED IN CS+

Authors :   A. M. Ren, K. R. Rajashankar, D. J. Patel

Date :   12 Apr 12 (Deposition) - 09 May 12 (Release) - 13 Feb 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.85

Chains :   Asym./Biol. Unit : A

Keywords :   Pseudoknot, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Ren, K. R. Rajashankar, D. J. Patel
Fluoride Ion Encapsulation By Mg2+ Ions And Phosphates In A Fluoride Riboswitch.
Nature V. 486 85 2012
PubMed-ID: 22678284 | Reference-DOI: 10.1038/NATURE11152

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 14)

Sites (12, 12)

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	G A:5 , HOH A:215 , HOH A:216 , HOH A:218	BINDING SITE FOR RESIDUE CS A 101
02	AC2	SOFTWARE	HOH A:210 , HOH A:219	BINDING SITE FOR RESIDUE CS A 102
03	AC3	SOFTWARE	C A:37	BINDING SITE FOR RESIDUE CS A 104
04	AC4	SOFTWARE	G A:35 , HOH A:213 , HOH A:214	BINDING SITE FOR RESIDUE CS A 105
05	AC5	SOFTWARE	G A:29 , HOH A:208 , HOH A:211	BINDING SITE FOR RESIDUE MG A 106
06	AC6	SOFTWARE	GTP A:1 , C A:18	BINDING SITE FOR RESIDUE MG A 107
07	AC7	SOFTWARE	A A:6 , U A:7 , U A:41 , G A:42 , MG A:109 , MG A:110 , F A:113 , HOH A:201	BINDING SITE FOR RESIDUE MG A 108
08	AC8	SOFTWARE	A A:6 , G A:42 , MG A:108 , MG A:110 , F A:113 , HOH A:219	BINDING SITE FOR RESIDUE MG A 109
09	AC9	SOFTWARE	U A:7 , G A:8 , U A:41 , MG A:108 , MG A:109 , F A:113	BINDING SITE FOR RESIDUE MG A 110
10	BC1	SOFTWARE	A A:40 , HOH A:202 , HOH A:203 , HOH A:204 , HOH A:205	BINDING SITE FOR RESIDUE MG A 111
11	BC2	SOFTWARE	G A:10 , G A:11 , HOH A:210 , HOH A:217	BINDING SITE FOR RESIDUE MG A 112
12	BC3	SOFTWARE	A A:6 , U A:7 , U A:41 , G A:42 , MG A:108 , MG A:109 , MG A:110	BINDING SITE FOR RESIDUE F A 113

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:52
                                                                                   
                  4ena A  1 gGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG 52
                            |       10        20        30        40        50  
                            |                                                   
                            1-GTP

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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