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(-) Description

Title :  HIGH SPEED X-RAY ANALYSIS OF PLANT ENZYMES AT ROOM TEMPERATURE
 
Authors :  L. Xia, C. Rajendran, M. Ruppert, S. Panjikar, M. Wang, J. Stoeckigt
Date :  09 Apr 12  (Deposition) - 20 Feb 13  (Release) - 20 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Raucaffricine-O-Beta-D-Glucosidase, Raucaffricine Beta-Glucosidase Activity, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Xia, C. Rajendran, M. Ruppert, S. Panjikar, M. Wang, J. Stoeckigt
High Speed X-Ray Analysis Of Plant Enzymes At Room Temperature.
Phytochemistry 2012
PubMed-ID: 22704651  |  Reference-DOI: 10.1016/J.PHYTOCHEM.2012.05.009

(-) Compounds

Molecule 1 - RAUCAFFRICINE-O-BETA-D-GLUCOSIDASE
    Chains: A, B
    EC Number: 3.2.1.125
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-513
    Mutation: YES
    Organism Common: DEVILPEPPER
    Organism Scientific: RAUVOLFIA SERPENTINA
    Organism Taxid: 4060

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2CL2Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:36 , HIS A:140 , GLN A:186 , TYR A:347 , GLU A:420 , TRP A:469 , GLU A:476 , TRP A:477BINDING SITE FOR RESIDUE BGC A 601
2AC2SOFTWAREARG A:107 , SER A:109 , SER B:434 , HOH B:779BINDING SITE FOR RESIDUE CL B 601
3AC3SOFTWARESER A:434 , ARG B:107 , SER B:109 , HOH B:795BINDING SITE FOR RESIDUE CL B 602
4AC4SOFTWAREGLN B:36 , HIS B:140 , GLN B:186 , TYR B:347 , GLU B:420 , TRP B:469 , GLU B:476 , TRP B:477BINDING SITE FOR RESIDUE BGC B 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EK7)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:201 -Pro A:202
2Trp A:469 -Ser A:470
3Ala B:201 -Pro B:202
4Trp B:469 -Ser B:470

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EK7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EK7)

(-) Exons   (0, 0)

(no "Exon" information available for 4EK7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4ek7a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....eeeee.hhhhhh..........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..eeeee.hhhhhh...hhhhh.hhhhhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhh....eeeeeeeeeeeeee....hhhhhh.eeee.ee..ee.............hhhhhhhhhhhhhhhh...eeeee...........hhhhhh.hhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhh.......eee.......eeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ek7 A  13 DATRISRSDFPADFIMGTGSSAYQIEGGARDGGRGPSIWDTFTHRRPDMIRGGTNGDVAVDSYHLYKEDVNILKNLGLDAYRFSISWSRVLPGGRLSGGVNKEGINYYNNLIDGLLANGIKPFVTLFHWDVPQALEDEYGGFLSPRIVDDFCEYAELCFWEFGDRVKHWMTLNQPWTFSVHGYATGLYAPGRGRSTGNPGTEPYWVTHHLLLAHAAAVELYKNKFQRGQEGQIGISHATQWMEPWDENSASDVEAAARALDFMLGWFMEPITSGDYPKSMKKFVGSRLPKFSPEQSKMLKGSYDFVGLNYYTASYVTNASNFSYNTDIHVTYETDRNGVPIGPQSGSDWLLIYPEGIRKILVYTKKTYNVPLIYVTENGVDDVKNTNLTLSEARKDSMRLKYLQDHIFNVRQAMNDGVNVKGYFAWSLLDNFEWGEGYGVRFGIIHIDYNDNFARYPKDSAVWLMNSFHK 513
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202   ||  236       246       256       266       276       286       296       306       316       326       336       346       356|      373       383       393       403       413       423       433       443       453       463       473       483       493       503       513
                                                                                                                                                                                                                           206|                                                                                                                          356|                                                                                                                                                     
                                                                                                                                                                                                                            231                                                                                                                           364                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4ek7b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....eeeee.hhhhhh..........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..eeeee.hhhhhh...hhhhh.hhhhhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeee....hhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhh....eeeeeeeeeeeeee....hhhhhh.eeee.ee..ee.............hhhhhhhhhhhhhhhh...eeeee...........hhhhhh.hhhhhhhhhhhhhhhhhhhhh...eeeeeee......hhhhh.......eee.......eeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ek7 B  13 DATRISRSDFPADFIMGTGSSAYQIEGGARDGGRGPSIWDTFTHRRPDMIRGGTNGDVAVDSYHLYKEDVNILKNLGLDAYRFSISWSRVLPGGRLSGGVNKEGINYYNNLIDGLLANGIKPFVTLFHWDVPQALEDEYGGFLSPRIVDDFCEYAELCFWEFGDRVKHWMTLNQPWTFSVHGYATGLYAPGRGRSTGNPGTEPYWVTHHLLLAHAAAVELYKNKFQRGQEGQIGISHATQWMEPWDENSASDVEAAARALDFMLGWFMEPITSGDYPKSMKKFVGSRLPKFSPEQSKMLKGSYDFVGLNYYTASYVTNASNFSYNTDIHVTYETDRNGVPIGPQSGSDWLLIYPEGIRKILVYTKKTYNVPLIYVTENGVDDVKNTNLTLSEARKDSMRLKYLQDHIFNVRQAMNDGVNVKGYFAWSLLDNFEWGEGYGVRFGIIHIDYNDNFARYPKDSAVWLMNSFHK 513
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202   ||  236       246       256       266       276       286       296       306       316       326       336       346       356|      373       383       393       403       413       423       433       443       453       463       473       483       493       503       513
                                                                                                                                                                                                                           206|                                                                                                                          356|                                                                                                                                                     
                                                                                                                                                                                                                            231                                                                                                                           364
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EK7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EK7)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

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  3.2.1.125
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        RG1_RAUSE | Q9SPP9: 3u57 3u5u 3u5y 3zj6 4a3y 4atd 4atl

(-) Related Entries Specified in the PDB File

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