4EJZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF MBOGG1 IN COMPLEX WITH LOW AFFINITY DNA LIGAND

Authors :   T. Jiang, H. J. Yu, L. J. Bi, X. E. Zhang, M. Z. Yang

Date :   08 Apr 12 (Deposition) - 20 Mar 13 (Release) - 20 Mar 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.05

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,D  (1x)
Biol. Unit 2: B,E,F  (1x)

Keywords :   8-Oxoguanine Dna Glycosylase, Dna, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. J. Yu, M. Z. Yang, X. E. Zhang, L. J. Bi, T. Jiang
Crystal Structures Of Mbogg1 In Complex With Two Abasic Dna Ligands
J. Struct. Biol. V. 181 252 2013
PubMed-ID: 23246782 | Reference-DOI: 10.1016/J.JSB.2012.12.003

Molecule 1 - 3-METHYLADENINE DNA GLYCOSYLASE
	Chains	:	A, B
	EC Number	:	3.2.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	ALKA
	Organism Scientific	:	THERMOANAEROBACTER TENGCONGENSIS
	Organism Taxid	:	273068
	Strain	:	MB4
	Synonym	:	8-OXOGUANINE-DNA-GLYCOSYLASE

*Molecule 2 - DNA (5'-D(APGPCPGPTPCPCPAP(3DR) PGPTPCPTPAPCPC)-3')*
	Chains	:	C, E
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 3 - DNA (5'-D(TGPGPTPAPGPAPCPTPTPGPGPAPCPGPC)- 3')*
	Chains	:	D, F
	Engineered	:	YES
	Synthetic	:	YES

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A		C	D
Biological Unit 2 (1x)	:		B			E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	3DR	2	Mod. Nucleotide	1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	3DR	1	Mod. Nucleotide	1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	3DR	1	Mod. Nucleotide	1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE

(no "Site" information available for 4EJZ)

(no "SS Bond" information available for 4EJZ)

(no "Cis Peptide Bond" information available for 4EJZ)

(no "SAP(SNP)/Variant" information available for 4EJZ)

(no "PROSITE Motif" information available for 4EJZ)

(no "Exon" information available for 4EJZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeee.....hhhhhhh......eee.....eeeee..eeeeeeee..eeeee..hhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhh..........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.eeee..eeee...hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.....hhhhhhhhhhhh.........hhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ejz A   1 MKYNVEEKGTKVIVRGIADFNLKETFESGQCFRWNEEEDGSYTGVAYDRVVNVKLEGDTLIIDNTNLTDFYDIWFDYFDLGRDYGQIKESLSKDPVLKEAIKFGQGIRILRQDTWETLVSFIVSQNNRIPQIKKVIENLATSFGNPIEYKGKIYYTFPKPEELVMYDVETIAKTRCGFRAKYIFDAASKVFSGEINLLKLHEYSTSEIRDILMTINGVGPKVADCVILYSIGRYDTFPTDVWIKRIVEHLYLKREGTPVEIQLFAIDKFGDLSGFAQQYLFYYGREMGK 289
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Chain B from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeee.....hhhhhhh......eee.....eeeee..eeeeeeee..eeeee..hhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhh..........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.eeee..eeee...hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.........hhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ejz B   1 MKYNVEEKGTKVIVRGIADFNLKETFESGQCFRWNEEEDGSYTGVAYDRVVNVKLEGDTLIIDNTNLTDFYDIWFDYFDLGRDYGQIKESLSKDPVLKEAIKFGQGIRILRQDTWETLVSFIVSQNNRIPQIKKVIENLATSFGNPIEYKGKIYYTFPKPEELVMYDVETIAKTRCGFRAKYIFDAASKVFSGEINLLKLHEYSTSEIRDILMTINGVGPKVADCVILYSIGRYDTFPTDVWIKRIVEHLYLKREGTPVEIQLFAIDKFGDLSGFAQQYLFYYGREMGK 289
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Chain C from PDB  Type:DNA  Length:16
                                                
                 4ejz C  11 AGCGTCCAxGTCTACC  26
                                    20      
                                   19-3DR

Chain D from PDB  Type:DNA  Length:15
                                               
                 4ejz D   2 GGTAGACTTGGACGC  16
                                    11

Chain E from PDB  Type:DNA  Length:16
                                                
                 4ejz E  11 AGCGTCCAxGTCTACC  26
                                    20      
                                   19-3DR

Chain F from PDB  Type:DNA  Length:15
                                               
                 4ejz F   2 GGTAGACTTGGACGC  16
                                    11

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4EJZ)

(no "CATH Domain" information available for 4EJZ)

(no "Pfam Domain" information available for 4EJZ)

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	Sites
(no "Sites" information available for 4ejz)

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	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	4ejz
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	Q8R5T9_CALS4 \| Q8R5T9	:	4ejy

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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