4EIS - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURAL BASIS FOR SUBSTRATE TARGETING AND CATALYSIS BY FUNGAL POLYSACCHARIDE MONOOXYGENASES (PMO-3)

Authors :   X. Li, W. T. Beeson, C. M. Phillips, M. A. Marletta, J. H. Cate

Date :   05 Apr 12 (Deposition) - 23 May 12 (Release) - 27 Jun 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.37

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Gh61, Pmo, Cellulase, Biofuels, Cbm33, Copper Monooxygenase, Peroxide, Superoxide, Cbp21, Beta-Sandwich Fold, Secreted, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Li, W. T. Beeson, C. M. Phillips, M. A. Marletta, J. H. Cate
Structural Basis For Substrate Targeting And Catalysis By Fungal Polysaccharide Monooxygenases.
Structure V. 20 1051 2012
PubMed-ID: 22578542 | Reference-DOI: 10.1016/J.STR.2012.04.002

Molecule 1 - POLYSACCHARIDE MONOOXYGENASE-3
	Chains	:	A
	Organism Scientific	:	NEUROSPORA CRASSA
	Organism Taxid	:	367110
	Other Details	:	PMO-3 (NCU07898) WAS PURIFIED FROM NEUROSPORA CRASSA SECRETOME
	Strain	:	ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987

Molecule 2 - POLYSACCHARIDE MONOOXYGENASE-3
	Chains	:	B
	Organism Scientific	:	NEUROSPORA CRASSA
	Organism Taxid	:	367110
	Other Details	:	PMO-3 (NCU07898) WAS PURIFIED FROM NEUROSPORA CRASSA SECRETOME
	Strain	:	ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 10)

No.	Name	Count	Type	Full Name
1	CU	2	Ligand/Ion	COPPER (II) ION
2	DAH	1	Mod. Amino Acid	3,4-DIHYDROXYPHENYLALANINE
3	HIC	2	Mod. Amino Acid	4-METHYL-HISTIDINE
4	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	PER	1	Ligand/Ion	PEROXIDE ION

Biological Unit 1 (4, 5)

No.	Name	Count	Type	Full Name
1	CU	-1	Ligand/Ion	COPPER (II) ION
2	DAH	1	Mod. Amino Acid	3,4-DIHYDROXYPHENYLALANINE
3	HIC	1	Mod. Amino Acid	4-METHYL-HISTIDINE
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	PER	1	Ligand/Ion	PEROXIDE ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	CU	-1	Ligand/Ion	COPPER (II) ION
2	DAH	-1	Mod. Amino Acid	3,4-DIHYDROXYPHENYLALANINE
3	HIC	1	Mod. Amino Acid	4-METHYL-HISTIDINE
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	PER	-1	Ligand/Ion	PEROXIDE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIC A:1 , HIS A:82 , TYR A:171 , PER A:302	BINDING SITE FOR RESIDUE CU A 301
2	AC2	SOFTWARE	HIC A:1 , CU A:301 , HOH A:562 , HOH A:568 , TYR B:24	BINDING SITE FOR RESIDUE PER A 302
3	AC3	SOFTWARE	ASP A:5 , ASN A:6 , PHE A:13 , TRP A:75 , NAG A:304 , HOH A:517 , HOH A:646 , HOH A:700 , HOH A:734	BINDING SITE FOR RESIDUE NAG A 303
4	AC4	SOFTWARE	TRP A:75 , ALA A:133 , PRO A:134 , ALA A:135 , NAG A:303 , HOH A:581 , HOH A:642 , HOH A:704 , HOH A:763	BINDING SITE FOR RESIDUE NAG A 304
5	AC5	SOFTWARE	HIC B:1 , HIS B:82 , TYR B:171 , HOH B:401	BINDING SITE FOR RESIDUE CU B 301
6	AC6	SOFTWARE	ASP B:5 , ASN B:6 , PHE B:13 , TRP B:75 , NAG B:303 , HOH B:552 , HOH B:559 , HOH B:637 , HOH B:678	BINDING SITE FOR RESIDUE NAG B 302
7	AC7	SOFTWARE	TRP B:75 , ILE B:77 , ALA B:133 , PRO B:134 , ALA B:135 , NAG B:302 , HOH B:458 , HOH B:709	BINDING SITE FOR RESIDUE NAG B 303

Asymmetric Unit

No.	Residues
1	A:52	-	A:174
2	A:93	-	A:98
3	A:144	-	A:225
4	B:52	-	B:174
5	B:93	-	B:98
6	B:144	-	B:225

Asymmetric Unit

No.	Residues
1	Ala A:133	-	Pro A:134
2	Tyr A:165	-	Pro A:166
3	Phe A:194	-	Pro A:195
4	Ala B:133	-	Pro B:134
5	Tyr B:165	-	Pro B:166
6	Phe B:194	-	Pro B:195

(no "SAP(SNP)/Variant" information available for 4EIS)

(no "PROSITE Motif" information available for 4EIS)

(no "Exon" information available for 4EIS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeee.....hhhhh......................hhhhhh.........eeee...eeeeee..........eeeeeee....hhhhh.........eeeeee..........hhhhhh...eeeee.......eeeeeeeeeee..........eeeeeeeeeeee............................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eis A   1 hGFVDNATIGGQFYQFYQPYQDPfMGSPPDRISRKIPGNGPVEDVTSLAIQCNADSAPAKLHASAAAGSTVTLRWTIWPDSHVGPVITYMARCPDTGCQDWTPSASDKVWFKIKEGGREGTSNVWAATPLMTAPANYEYAIPSCLKPGYYLVRHEIIALHSAYSYPGAQFYPGCHQLQVTGSGTKTPSSGLVSFPGAYKSTDPGVTYDAYQAATYTIPGPAVFTC 225
                            |       10        20   |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220     
                            |                     24-DAH                                                                                                                                                                                                     
                            1-HIC

Chain B from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeee.....hhhhh......................hhhhhh.........eeee...eeeeee..........eeeeeee..................eeeeee..........hhhhhh...eeeee.......eeeeeeeeeee..........eeeeeeeeeeee............................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eis B   1 hGFVDNATIGGQFYQFYQPYQDPYMGSPPDRISRKIPGNGPVEDVTSLAIQCNADSAPAKLHASAAAGSTVTLRWTIWPDSHVGPVITYMARCPDTGCQDWTPSASDKVWFKIKEGGREGTSNVWAATPLMTAPANYEYAIPSCLKPGYYLVRHEIIALHSAYSYPGAQFYPGCHQLQVTGSGTKTPSSGLVSFPGAYKSTDPGVTYDAYQAATYTIPGPAVFTC 225
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220     
                            1-HIC

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4EIS)

(no "CATH Domain" information available for 4EIS)

(no "Pfam Domain" information available for 4EIS)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CU	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DAH	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		HIC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PER	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:133 - Pro A:134	[ RasMol ]
		Ala B:133 - Pro B:134	[ RasMol ]
		Phe A:194 - Pro A:195	[ RasMol ]
		Phe B:194 - Pro B:195	[ RasMol ]
		Tyr A:165 - Pro A:166	[ RasMol ]
		Tyr B:165 - Pro B:166	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	4eis
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q7SA19_NEUCR \| Q7SA19
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q7SA19_NEUCR \| Q7SA19
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 4EIS)

4eir	STRUCTURAL BASIS FOR SUBSTRATE TARGETING AND CATALYSIS BY FUNGAL POLYSACCHARIDE MONOOXYGENASES (PMO-2)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 10)

Sites (7, 7)

SS Bonds (6, 6)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File