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(-) Description

Title :  UNLIGANDED E. CLOACAE R91K MURA
 
Authors :  H. Han, J. -Y. Zhu, E. Schonbrunn
Date :  05 Apr 12  (Deposition) - 10 Apr 13  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Open Enzyme State, Cell Wall, Biogenesis/Degradation, Peptidoglycan Synthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. -Y. Zhu, Y. Yang, S. Betzi, H. Han, E. Schonbrunn
Open-Close Transition Of Mura
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE
    Chains: A
    EC Number: 2.5.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET9D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ECL_04571, MURA, MURZ
    Mutation: YES
    Organism Scientific: ENTEROBACTER CLOACAE SUBSP. CLOACAE
    Organism Taxid: 716541
    Strain: ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56
    Synonym: MURA, ENOYLPYRUVATE TRANSFERASE, UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE, EPT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2GOL2Ligand/IonGLYCEROL
3IAS1Mod. Amino AcidBETA-L-ASPARTIC ACID
4PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:252 , TRP A:279 , ARG A:340 , GLY A:362 , ALA A:363 , HOH A:668 , HOH A:841 , HOH A:982BINDING SITE FOR RESIDUE GOL A 501
02AC2SOFTWAREHIS A:344 , HIS A:355 , GLY A:356 , HOH A:671 , HOH A:703 , HOH A:1010 , HOH A:1064BINDING SITE FOR RESIDUE GOL A 502
03AC3SOFTWAREARG A:187 , THR A:210 , ASP A:211 , HOH A:862 , HOH A:1030 , HOH A:1037BINDING SITE FOR RESIDUE EDO A 503
04AC4SOFTWARETHR A:10 , ASN A:412BINDING SITE FOR RESIDUE EDO A 504
05AC5SOFTWAREGLN A:59 , GLY A:61 , ASN A:79BINDING SITE FOR RESIDUE EDO A 505
06AC6SOFTWAREARG A:227 , ASN A:253 , HOH A:938 , HOH A:987BINDING SITE FOR RESIDUE EDO A 506
07AC7SOFTWAREGLU A:37 , LYS A:91 , LEU A:221 , GLY A:222 , HOH A:1034BINDING SITE FOR RESIDUE EDO A 507
08AC8SOFTWARETRP A:95 , HOH A:837BINDING SITE FOR RESIDUE EDO A 508
09AC9SOFTWAREARG A:220 , PHE A:328 , ARG A:331 , ASP A:369 , HOH A:891BINDING SITE FOR RESIDUE EDO A 509
10BC1SOFTWAREASN A:196 , TYR A:226 , ARG A:227 , HOH A:624 , HOH A:785 , HOH A:910 , HOH A:1057BINDING SITE FOR RESIDUE PGE A 510

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EII)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:8 -Pro A:9
2His A:299 -Pro A:300

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EII)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EII)

(-) Exons   (0, 0)

(no "Exon" information available for 4EII)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4eiia_ A: UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ)                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeee...hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh..eeee...eeee.......eehhhhhh.hhhhhhhhhhhhhhhheeeee............hhhhhhhhhh..eeeee..eeeee........eee....hhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhh..eee.....eeeee.......eeee...hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee...eeeee..........ee.......hhhhhhhhhhhhhh...eeeee........hhhhhhhhh..eeeee..eeeee........eee..hhhhhhhhhhhhhhh.eeeeee.hhhhhhhh.hhhhhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eii A   1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERxGSVWIDASNVNNFSAPYDLVKTMKASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE 419
                                    10        20        30        40        50        60      | 70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410         
                                                                                             67-IAS
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EII)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EII)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:8 - Pro A:9   [ RasMol ]  
    His A:299 - Pro A:300   [ RasMol ]  
 

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  4eii
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  MURA_ENTCC | P33038
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  2.5.1.7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MURA_ENTCC | P33038: 1dlg 1ejc 1ejd 1eyn 1naw 1q3g 1ryw 1ybg 3kqa 3lth 3spb 3su9 3swa 3swi 3swq 3upk 3v4t 3v5v 4e7b 4e7c 4e7d 4e7e 4e7f 4e7g

(-) Related Entries Specified in the PDB File

4e7b 4e7c 4e7d 4e7e 4e7f 4e7g