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(-) Description

Title :  ACTIVATOR OF THE 2-HYDROXYISOCAPROYL-COA DEHYDRATASE FROM CLOSTRIDIUM DIFFICILE WITHOUT NUCLEOTIDE
 
Authors :  S. H. Knauer, H. Dobbek
Date :  05 Apr 12  (Deposition) - 08 Aug 12  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Actin Fold, Atpase, Electron Transfer, Atp/Adp Binding, 2- Hydroxyisocaproyl-Coa Dehydratase Binding, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Knauer, W. Buckel, H. Dobbek
On The Atp-Dependent Activation Of The Radical Enzyme (R)-2-Hydroxyisocaproyl-Coa Dehydratase.
Biochemistry V. 51 6609 2012
PubMed-ID: 22827463  |  Reference-DOI: 10.1021/BI300571Z

(-) Compounds

Molecule 1 - ACTIVATOR OF 2-HYDROXYISOCAPROYL-COA DEHYDRATASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3) CODONPLUS-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HADI
    Organism Scientific: CLOSTRIDIUM DIFFICILE
    Organism Taxid: 1496

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SF41Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SF42Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:125 , ALA A:126 , ALA A:127 , CYS A:164 , THR A:165BINDING SITE FOR RESIDUE SF4 A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EIA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:208 -Asn A:209

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EIA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EIA)

(-) Exons   (0, 0)

(no "Exon" information available for 4EIA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeeeeee...eeeeeeee......hhhhhhhhhhhhhhh.hhhhh..eeee..hhhhh....ee.hhhhhhhhhhhhhh....eeeee....eeeeee.....eeeeeee......hhhhhhhhhhhh..hhhhhhhhhhhh.........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eia A   1 MYTMGLDIGSTASKGVILKNGEDIVASETISSGTGTTGPSRVLEKLYGKTGLAREDIKKVVVTGYGRMNYSDADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELGSISMNSQNEVSISSTCTVFAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKRIGVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDEAKESQ 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EIA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EIA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EIA)

(-) Gene Ontology  (7, 7)

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  4eia
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HADI_CLODI | Q5U925: 4eht 4ehu

(-) Related Entries Specified in the PDB File

4eht ACTIVATOR OF THE 2-HYDROXYISOCAPROYL-COA DEHYDRATASE FROM CLOSTRIDIUM DIFFICILE WITH BOUND ADP
4ehu ACTIVATOR OF THE 2-HYDROXYISOCAPROYL-COA DEHYDRATASE FROM CLOSTRIDIUM DIFFICILE WITH BOUND ADPNP