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(-) Description

Title :  CRYSTAL STRUCTURE OF XV19 TCR IN COMPLEX WITH CD1D-SULFATIDE C24:1
 
Authors :  O. Patel, S. Gras, J. Rossjohn
Date :  04 Apr 12  (Deposition) - 25 Jul 12  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Sulfatide, Lipid, Cd1D, Nkt Typeii, Tcr, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Patel, D. G. Pellicci, S. Gras, M. L. Sandoval-Romero, A. P. Uldrich T. Mallevaey, A. J. Clarke, J. Le Nours, A. Theodossis, S. L. Cardell, L. Gapin, D. I. Godfrey, J. Rossjohn
Recognition Of Cd1D-Sulfatide Mediated By A Type Ii Natural Killer T Cell Antigen Receptor.
Nat. Immunol. V. 13 857 2012
PubMed-ID: 22820603  |  Reference-DOI: 10.1038/NI.2372

(-) Compounds

Molecule 1 - ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1
    Chains: A, E
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PFASBACPHP10
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 19-297
    Gene: CD1D1, CD1.1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CD1D
 
Molecule 2 - BETA-2-MICROGLOBULIN
    Chains: B, F
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PFASBACPHP10
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 21-119
    Gene: B2M
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - VALPHA1 XV19 TYPE II NATURAL KILLER T CELL RECEPTOR (MOUSE VARIABLE DOMAIN, HUMAN CONSTANT DOMAIN)
    Chains: C, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: EXTRACELLULAR DOMAIN (SEE REMARK 999)
    Organism Common: MOUSE, HUMAN
    Organism Scientific: MUS MUSCULUS, HOMO SAPIENS
    Organism Taxid: 10090, 9606
 
Molecule 4 - VBETA16 XV19 TYPE II NATURAL KILLER T CELL RECEPTOR (MOUSE VARIABLE DOMAIN, HUMAN CONSTANT DOMAIN)
    Chains: D, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: EXTRACELLULAR DOMAIN (SEE REMARK 999)
    Organism Common: MOUSE, HUMAN
    Organism Scientific: MUS MUSCULUS, HOMO SAPIENS
    Organism Taxid: 10090, 9606

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 16)

Asymmetric Unit (5, 16)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CIS2Ligand/Ion(15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE
3FLC1Ligand/IonCITRATE ANION
4MAN1Ligand/IonALPHA-D-MANNOSE
5NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (5, 9)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CIS1Ligand/Ion(15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE
3FLC1Ligand/IonCITRATE ANION
4MAN1Ligand/IonALPHA-D-MANNOSE
5NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CIS1Ligand/Ion(15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE
3FLC-1Ligand/IonCITRATE ANION
4MAN-1Ligand/IonALPHA-D-MANNOSE
5NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:161 , ASN A:165 , NAG A:402 , PHE C:51 , SER C:52 , LYS C:67BINDING SITE FOR RESIDUE NAG A 401
02AC2SOFTWARETRP A:129 , GLY A:130 , NAG A:401 , BMA A:403 , SER C:52 , ASP C:53BINDING SITE FOR RESIDUE NAG A 402
03AC3SOFTWARENAG A:402 , MAN A:404BINDING SITE FOR RESIDUE BMA A 403
04AC4SOFTWAREBMA A:403BINDING SITE FOR RESIDUE MAN A 404
05AC5SOFTWAREALA A:19 , ASN A:20 , TRP A:23 , SER C:131BINDING SITE FOR RESIDUE NAG A 405
06AC6SOFTWARESER A:22 , SER A:24 , ASN A:42 , NAG A:407BINDING SITE FOR RESIDUE NAG A 406
07AC7SOFTWARESER A:22 , NAG A:406BINDING SITE FOR RESIDUE NAG A 407
08AC8SOFTWAREPRO A:197 , ARG A:204 , HIS A:295 , HIS A:297 , ASP B:98 , LYS H:3BINDING SITE FOR RESIDUE FLC A 408
09AC9SOFTWARESER A:28 , PHE A:70 , TYR A:73 , SER A:76 , PHE A:77 , ASP A:80 , VAL A:118 , TRP A:133 , LEU A:150 , GLY A:155 , THR A:156 , PHE D:96 , TRP D:97BINDING SITE FOR RESIDUE CIS A 409
10BC1SOFTWAREGLN E:161 , ASN E:165 , NAG E:402 , PHE G:51 , SER G:52 , LYS G:67BINDING SITE FOR RESIDUE NAG E 401
11BC2SOFTWARETRP E:129 , GLY E:130 , NAG E:401 , BMA E:403 , SER G:52 , ASP G:53BINDING SITE FOR RESIDUE NAG E 402
12BC3SOFTWARENAG E:402BINDING SITE FOR RESIDUE BMA E 403
13BC4SOFTWAREALA E:19 , ASN E:20 , TRP E:23BINDING SITE FOR RESIDUE NAG E 404
14BC5SOFTWARESER E:22 , SER E:24 , ASN E:42 , NAG E:406BINDING SITE FOR RESIDUE NAG E 405
15BC6SOFTWARESER E:22 , NAG E:405BINDING SITE FOR RESIDUE NAG E 406
16BC7SOFTWARELEU A:282 , LEU A:286 , GLN A:289 , TYR E:73 , SER E:76 , PHE E:77 , ASP E:80 , LEU E:150 , ASP E:153 , GLY E:155 , THR E:156 , PHE H:96 , TRP H:97BINDING SITE FOR RESIDUE CIS E 407

(-) SS Bonds  (15, 15)

Asymmetric Unit
No.Residues
1A:104 -A:168
2A:208 -A:263
3B:25 -B:80
4C:23 -C:89
5C:136 -C:186
6C:161 -D:171
7D:23 -D:92
8D:145 -D:210
9E:104 -E:168
10E:208 -E:263
11F:25 -F:80
12G:23 -G:89
13G:161 -H:171
14H:23 -H:92
15H:145 -H:210

(-) Cis Peptide Bonds  (19, 19)

Asymmetric Unit
No.Residues
1Ser A:89 -Pro A:90
2Tyr A:94 -Pro A:95
3Ser A:198 -Ser A:199
4Tyr A:214 -Pro A:215
5His B:31 -Pro B:32
6Ser C:7 -Pro C:8
7Ile D:7 -Pro D:8
8Gln D:80 -Pro D:81
9Tyr D:151 -Pro D:152
10Ser E:89 -Pro E:90
11Tyr E:94 -Pro E:95
12Tyr E:214 -Pro E:215
13His E:284 -Ile E:285
14His F:31 -Pro F:32
15Ser G:7 -Pro G:8
16Gly H:1 -Pro H:2
17Ile H:7 -Pro H:8
18Gln H:80 -Pro H:81
19Tyr H:151 -Pro H:152

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EI5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EI5)

(-) Exons   (0, 0)

(no "Exon" information available for 4EI5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:295
                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeeee..eeeeee.......ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeee..eeeeeee..eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee......eeeeeeeeeee.....eeeeee..ee...eee...ee.....eeeeeeeeee.......eeeeehhhhh...eeee..hhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ei5 A   7 NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLACRVKHSSLGGQDIILYWGSLHHILDAQKMVWNHRHHHHH 301
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296     


Chain B from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains d4ei5b_ B: beta2-microglobulin                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.........eeeeeeeeee....eeeeeee..ee....ee...ee.....eeeeeeeee.......eeeeeee......eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 4ei5 B   2 QKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM  99
                                    11        21        31        41        51        61        71        81        91        


Chain C from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d4ei5c1 C:2-114 automated matches                                                                                d4ei5c2 C:115-202 automated matches                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeee....eeeeeee......eeeeeee......eeeeee...eeeee..eeeeeehhh.eeeeee...hhhhheeeeeeee.........ee...eeeeee........eeeeeee......eeeeeeee.............eee...eeeee....eeeeeeeeee....................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ei5 C   2 QKVQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFP 202
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201 


Chain D from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains d4ei5d1 D:2-115 automated matches                                                                                 d4ei5d2 D:116-243 automated matches                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeeee....eeeeee......eeeeeee.....eeeeeeee..eeeee.......eeee......eeeee...hhhhheeeeeeee........ee...eeeeee.hhhhh...eeeeee.hhhhhhhhheeeeeeeeeee....eeeeeee..eee...eee....ee.........eeeeeeeeeehhhhhh...eeeeeeee...................eeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ei5 D   2 PKVLQIPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRA 243
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241  


Chain E from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4ei5e1 E:7-185 CD1, alpha-1 and alpha-2 domains                                                                                                                                   d4ei5e2 E:186-290 automated matches                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeeee..eeeeee.......ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeee..eeeeeee..eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..eeeeeeeeeee.....eeeeee..ee...eee...ee.....eeeeeeeeee.......eeeee........eeee............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ei5 E   7 NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLACRVKHSSLGGQDIILYWGSLHHILDAQK 290
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196||     210       220       230       240       250       260       270       280       290
                                                                                                                                                                                                                        197|                                                                                        
                                                                                                                                                                                                                         202                                                                                        


Chain F from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains d4ei5f_ F: beta2-microglobulin                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.........eeeeeeeeee....eeeeeee..ee....ee...ee.....eeeeeeeee.......eeeeeee......eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4ei5 F   2 QKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWD  96
                                    11        21        31        41        51        61        71        81        91     


Chain G from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains d4ei5g1 G:2-114 automated matches                                                                                ----------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeee....eeeeeee......eeeeeee......eeeeee...eeeee..eeeeeehhh.eeeeee...hhhhheeeeeeee.........ee...eeeeee....................................eeeee....eeeee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ei5 G   2 QKVQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSNSIIPEDTFFP 202
                                    11        21        31        41        51        61        71        81        91       101       111       121   ||  143       153       163       173||     200  
                                                                                                                                                     125|                                 174|          
                                                                                                                                                      138                                  192          


Chain H from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains d4ei5h1 H:1-115 automated matches                                                                                  d4ei5h2 H:116-237 automated matches                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eeeee....eeeeee......eeeeeee.....eeeeeeee..eeeee.......eeee......eeeee...hhhhheeeeeeee........ee...eeeeee.hhhhh...eeeee..hhhhhhhhheeeeeeeeeee....eeeeeee..eee...eee........eeeeeeeeeehhhhhh....eeeeeee...................eeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ei5 H   1 GPKVLQIPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSA 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     ||187       197       207       217       227       237
                                                                                                                                                                                                         176|                                                     
                                                                                                                                                                                                          184
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 11)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EI5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EI5)

(-) Gene Ontology  (74, 83)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gln D:80 - Pro D:81   [ RasMol ]  
    Gln H:80 - Pro H:81   [ RasMol ]  
    Gly H:1 - Pro H:2   [ RasMol ]  
    His B:31 - Pro B:32   [ RasMol ]  
    His E:284 - Ile E:285   [ RasMol ]  
    His F:31 - Pro F:32   [ RasMol ]  
    Ile D:7 - Pro D:8   [ RasMol ]  
    Ile H:7 - Pro H:8   [ RasMol ]  
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    Ser G:7 - Pro G:8   [ RasMol ]  
    Tyr A:214 - Pro A:215   [ RasMol ]  
    Tyr A:94 - Pro A:95   [ RasMol ]  
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    Tyr H:151 - Pro H:152   [ RasMol ]  
 
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  4ei5
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  B2MG_MOUSE | P01887
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  CD1D1_MOUSE | P11609
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  B2MG_MOUSE | P01887
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  CD1D1_MOUSE | P11609
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2MG_MOUSE | P01887: 1bii 1bqh 1bz9 1cd1 1ddh 1ffn 1ffo 1ffp 1fg2 1fo0 1fzj 1fzk 1fzm 1fzo 1g6r 1g7p 1g7q 1hoc 1inq 1jpf 1jpg 1juf 1k8d 1kbg 1kj2 1kj3 1kpu 1kpv 1l6q 1ld9 1ldp 1leg 1lek 1lk2 1mhc 1mwa 1n3n 1n59 1n5a 1nam 1nan 1nez 1osz 1p1z 1p4l 1pqz 1qo3 1rjy 1rjz 1rk0 1rk1 1s7q 1s7r 1s7s 1s7t 1s7u 1s7v 1s7w 1s7x 1t0m 1t0n 1u58 1vac 1vad 1wbx 1wby 1wbz 1yn6 1yn7 1z5l 1zhb 1zhn 1zt1 1zt7 2akr 2ckb 2clv 2clz 2fik 2fo4 2fwo 2gaz 2mha 2ol3 2q7y 2qri 2qrs 2qrt 2vaa 2vab 2ve6 2zok 2zol 2zsv 2zsw 3arb 3ard 3are 3arf 3arg 3au1 3buy 3c8k 3cc5 3cch 3ch1 3cpl 3cvh 3dmm 3e6f 3e6h 3ecb 3fol 3fom 3fon 3ftg 3g08 3gml 3gmm 3gmn 3gmo 3gmp 3gmq 3gmr 3he6 3he7 3ilp 3ilq 3l3h 3ma7 3nwm 3o8x 3o9w 3p4m 3p4n 3p4o 3p9l 3p9m 3pab 3pqy 3pwu 3qi9 3quk 3qul 3qux 3quy 3quz 3rgv 3rol 3roo 3rtq 3rug 3rzc 3scm 3sda 3sdc 3sdd 3t1f 3ta3 3tbs 3tbt 3tbv 3tbw 3tby 3tn0 3to4 3tvm 3ubx 3vj6 3ws3 3ws6 4apq 4elm 4hs3 4huu 4huv 4huw 4hux 4hv8 4iho 4irj 4irs 4l8b 4l8c 4l8d 4mng 4mq7 4mx7 4nsk 4pg2 4pg9 4pgb 4pgc 4pgd 4pge 4pv8 4pv9 4y16 4y2d 4y4f 4y4h 4y4k 4zak 4zus 4zut 4zuu 4zuv 4zuw 5e8n 5e8o 5e8p 5efi 5fkp 5ivx 5j6g 5j6h 5jwd 5jwe 5sws 5swz
        CD1D1_MOUSE | P11609: 1cd1 1z5l 1zhn 2akr 2fik 2gaz 2q7y 3arb 3ard 3are 3arf 3arg 3au1 3g08 3gml 3gmm 3gmn 3gmo 3gmp 3gmq 3gmr 3he6 3he7 3ilp 3ilq 3ma7 3o8x 3o9w 3qi9 3qux 3quy 3quz 3rtq 3rug 3rzc 3scm 3sda 3sdc 3sdd 3t1f 3ta3 3tn0 3to4 3tvm 3ubx 4apq 4elm 4irj 4irs 4mng 4mq7 4mx7 4y16 4y2d 4y4f 4y4h 4y4k 4zak 5efi 5fkp

(-) Related Entries Specified in the PDB File

2akr 4ei6