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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF4466 FAMILY PROTEIN (PARMER_03218) FROM PARABACTEROIDES MERDAE ATCC 43184 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  04 Apr 12  (Deposition) - 30 May 12  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pf14725 Family Protein, Duf4466, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Parmer_03218) From Parabacteroides Merdae Atcc 43184 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PARMER_03218
    Organism Scientific: PARABACTEROIDES MERDAE
    Organism Taxid: 411477
    Strain: ATCC 43184

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric/Biological Unit (2, 17)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:52 , VAL A:53 , ASP A:173 , MSE A:174 , GLY A:193 , HOH A:528 , HOH A:570 , HOH A:676BINDING SITE FOR RESIDUE GOL A 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EI0)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:165 -Pro A:166
2Gly B:165 -Pro B:166

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EI0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EI0)

(-) Exons   (0, 0)

(no "Exon" information available for 4EI0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee............eeeeeeeee.......eeeeeeee........ee..eeeee.....eeeee.....eee..eeeee......eeeeeeeee.hhhhh..eeeeeeeeee....eeeeeeeeee....eeeeeeee.....eee........eeehhhhhhhhhhhhhhh.eeeee.......eeee....hhhhh.............eeeee....hhhhhh.......hhhhhhhh.......ee.......eeeee.....eeeeeeeeee....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ei0 A  33 PVSALSNDCIKRSLPVAPNIVGNEIEFAYAmAIPNELGKLSSAQVVSSIAGATGTYFDPNSYYTNSSGQDIPVKVCSDSQTNGTTTVIDFTVDTCAATLRYYYIIPEEARGKDVQFSFSVKASNGQVAEYKLGPYKISKmDmAKNLSVTNDKCYLSFLNEGEAVHIYSKADLQANPSLAAKIDImYAYSEKSDLSHAFYTSSSPKEYmGGTELPSGFVNNTKmIKVYGLQDRQLSDLQYSKFIDDLDFETIDmSKCTNYILGLKEEAGAWVETADGKYRAYVYINKASASEVTVSVKRYKm 333
                                    42        52        62|       72        82        92       102       112       122       132       142       152       162       172 |     182       192       202       212    |  222       232       242       252  |    262       272       282  |    292       302       312       322       332|
                                                         63-MSE                                                                                                      172-MSE                                      217-MSE                240-MSE        255-MSE                       285-MSE                                         333-MSE
                                                                                                                                                                       174-MSE                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee............eeeeeeeee.......eeeeeeee........ee..eeeee.....eeeee.....eee..eeeee......eeeeeeeee.hhhhh..eeeeeeeeee....eeeeeeeeee....eeeeeeee.....eee........eeehhhhhhhhhhhhhhh.eeeee.......eeee....hhhhh.............eeeeee...hhhhhh.......hhhhhhhh.......eeeee...eeeeee.....eeeeeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ei0 B  32 DPVSALSNDCIKRSLPVAPNIVGNEIEFAYAmAIPNELGKLSSAQVVSSIAGATGTYFDPNSYYTNSSGQDIPVKVCSDSQTNGTTTVIDFTVDTCAATLRYYYIIPEEARGKDVQFSFSVKASNGQVAEYKLGPYKISKmDmAKNLSVTNDKCYLSFLNEGEAVHIYSKADLQANPSLAAKIDImYAYSEKSDLSHAFYTSSSPKEYmGGTELPSGFVNNTKmIKVYGLQDRQLSDLQYSKFIDDLDFETIDmSKCTNYILGLKEEAGAWVETADGKYRAYVYINKASASEVTVSVKRYKm 333
                                    41        51        61 |      71        81        91       101       111       121       131       141       151       161       171| |    181       191       201       211     | 221       231       241       251   |   261       271       281   |   291       301       311       321       331 |
                                                          63-MSE                                                                                                      172-MSE                                      217-MSE                240-MSE        255-MSE                       285-MSE                                         333-MSE
                                                                                                                                                                        174-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EI0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EI0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EI0)

(-) Gene Ontology  (0, 0)

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