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(-) Description

Title :  CRYSTAL STRUCTURE OF OIF FROM LLAMA SEMINAL PLASMA
 
Authors :  K. E. Van Straaten, Y. A. Leduc, M. H. Ratto, X. P. Valderrama, T. J. Delb R. A. Pierson, G. P. Adams
Date :  30 Mar 12  (Deposition) - 22 Aug 12  (Release) - 26 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.32
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mature Oif, Beta Nerve Growth Factor, X-Ray Sequencing, Cysteine Knot, Signaling Protein, Hormone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. H. Ratto, Y. A. Leduc, X. P. Valderrama, K. E. Van Straaten, L. T. Delbaere, R. A. Pierson, G. P. Adams
The Nerve Of Ovulation-Inducing Factor In Semen.
Proc. Natl. Acad. Sci. Usa V. 109 15042 2012
PubMed-ID: 22908303  |  Reference-DOI: 10.1073/PNAS.1206273109

(-) Compounds

Molecule 1 - OVULATION-INDUCING FACTOR (OIF)
    Chains: A, B
    Fragment: MATURE OIF
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844
    Other Details: SEMINAL PLASMA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:32 , LYS A:34 , ARG A:100 , HOH A:306 , HOH A:342BINDING SITE FOR RESIDUE PO4 A 201
2AC2SOFTWARECYS A:110 , CYS B:110 , HOH B:306BINDING SITE FOR RESIDUE CL A 202
3AC3SOFTWARELYS B:34 , ARG B:100 , HOH B:314BINDING SITE FOR RESIDUE PO4 B 201

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:15 -A:80
2A:58 -A:108
3A:68 -A:110
4B:15 -B:80
5B:58 -B:108
6B:68 -B:110

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EFV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EFV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EFV)

(-) Exons   (0, 0)

(no "Exon" information available for 4EFV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains d4efva_ A: automated matches                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee....eee.....eeee..eee....eee..eeeeee........hhh.eeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 4efv A   9 RGEFSVCDSVSVWVADKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCRDPGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSKKA 116
                                    18        28        38        48        58  ||    73        83        93       103       113   
                                                                               61|                                                 
                                                                                67                                                 


Chain B from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains d4efvb_ B: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee....eee.....eeee..eeee..eeee..eeeeee.................eeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4efv B  10 GEFSVCDSVSVWVADKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNPVASGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSKKAS 117
                                    19        29        39        49        59        69        79        89        99       109
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EFV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EFV)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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