4EFI - JenaLib

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Title :   CRYSTAL STRUCTURE OF 3-OXOACYL-(ACYL-CARRIER PROTEIN) SYNTHASE FROM BURKHOLDERIA XENOVORANS LB400

Authors :   Seattle Structural Genomics Center For Infectious Disease, T. J. Abendroth, B. Staker, L. Stewart, Seattle Structural Genomics For Infectious Disease (Ssgcid)

Date :   29 Mar 12 (Deposition) - 11 Apr 12 (Release) - 09 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.35

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Acyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Baugh, L. A. Gallagher, R. Patrapuvich, M. C. Clifton, A. S. Gardberg, T. E. Edwards, B. Armour, D. W. Begley, S. H. Dieterich, D. M. Dranow, J. Abendroth, J. W. Fairman, D. Fox, B. L. Staker, I. Phan, A. Gillespie, R. Choi, S. Nakazawa-Hewitt, M. T. Nguyen, A. Napuli, L. Barrett, G. W. Buchko, R. Stacy, P. J. Myler, L. J. Stewart, C. Manoil W. C. Van Voorhis
Combining Functional And Structural Genomics To Sample The Essential Burkholderia Structome.
Plos One V. 8 53851 2013
PubMed-ID: 23382856 | Reference-DOI: 10.1371/JOURNAL.PONE.0053851

Molecule 1 - 3-OXOACYL-(ACYL-CARRIER PROTEIN) SYNTHASE
	Chains	:	A
	EC Number	:	2.3.1.41
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	AVA0421
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	BXENO_A4297, BXE_A0096
	Organism Scientific	:	BURKHOLDERIA XENOVORANS
	Organism Taxid	:	266265
	Strain	:	LB400

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 3)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	FMT	1	Ligand/Ion	FORMIC ACID
3	UNL	1	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FMT	1	Ligand/Ion	FORMIC ACID
3	UNL	1	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FMT	2	Ligand/Ion	FORMIC ACID
3	UNL	2	Ligand/Ion	UNKNOWN LIGAND

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:49 , VAL A:52 , ARG A:294 , HOH A:720 , HOH A:820	BINDING SITE FOR RESIDUE CL A 402
2	AC2	SOFTWARE	GLY A:16 , SER A:188 , GLY A:190 , ALA A:192	BINDING SITE FOR RESIDUE FMT A 403

(no "SS Bond" information available for 4EFI)

Asymmetric Unit

No.	Residues
1	Leu A:105	-	Pro A:106
2	Gly A:337	-	Tyr A:338
3	Gly A:348	-	Pro A:349

(no "SAP(SNP)/Variant" information available for 4EFI)

(no "PROSITE Motif" information available for 4EFI)

(no "Exon" information available for 4EFI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4efia1 A:6-192 automated matches                                                                                                                                                       d4efia2 A:193-358 automated matches                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.eeeeeeeeee...eee.hhhh...hhhhhhhhhhhhh..eee......hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeee....hhhhhhhhhhhhhhhh....eeeeeeeehhhhhh...hhhhhh....eeeeeeeee.....eeeeeeee.hhhhh.ee.........hhhhhhhhh.......eehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhh..hhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhh.eeeeeeeee...eeeeeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4efi A   6 FSAGRELRTQGARIAGVVSCVPSKQVDNDYFVERFDASAVRDVVKMIGVNRRRWADAQTSAGDLCRKAGEKLLAGLGWQADSIDALIFVSQTPNYRLPATAFVLQAELDLPASCLALDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTISKMIDPTDRSTSLLFGDAGTMTALETSNGDAAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFNFTLNAVPKLVSRTLDIAGRDKDSYDAFLFHQANLFMLKHLAKKAGLPAERVPVNIGEYGNTSCASIPLLITTELKDRLKEETLQLGMFGFGVGYSWASAALAVGPLNIVDTIET 358
                                    15        25        35|       48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278     ||289       299       309       319       329       339       349         
                                                        35|                                                                                                                                                                                                                                                  284|                                                                        
                                                         39                                                                                                                                                                                                                                                   286

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thiolase-like (231)

Superfamily: Thiolase-like (231)

Family: automated matches (108)

Protein domain: automated matches (108)

Burkholderia xenovorans [TaxId: 266265] (2)

1a	d4efia1	A:6-192
1b	d4efia2	A:193-358

(no "CATH Domain" information available for 4EFI)

(no "Pfam Domain" information available for 4EFI)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:337 - Tyr A:338	[ RasMol ]
		Gly A:348 - Pro A:349	[ RasMol ]
		Leu A:105 - Pro A:106	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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4dfe	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE III FROM BURKHOLDERIA XENOVORANS LB400 RELATED ID: BUXEA.00171.A RELATED DB: TARGETTRACK

Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (3, 3)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (6, 6)

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