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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GLYCOPEPTIDE ANTIBIOTIC SULFOTRANSFERASE STAL COMPLEXED WITH A3P AND DESULFO-A47934.
 
Authors :  R. Shi, M. Cygler
Date :  28 Mar 12  (Deposition) - 04 Jul 12  (Release) - 04 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Sulfotransferase, Glycopeptide Aglycone Complex, Glycopeptide Antibiotic Sulfotransferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Shi, C. Munger, L. Kalan, T. Sulea, G. D. Wright, M. Cygler
Structural Basis Of Sulfonation Of The Glycopeptide Antibiotic Scaffold By The Sulfotransferase Stal
Proc. Natl. Acad. Sci. Usa 2012
PubMed: search

(-) Compounds

Molecule 1 - STAL
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: STAL
    Organism Scientific: STREPTOMYCES TOYOCAENSIS
    Organism Taxid: 55952
    Strain: NRRL 15009
 
Molecule 2 - DESULFO-A47934
    Chains: C
    Engineered: YES
    Expression System: STREPTOMYCES TOYOCAENSIS
    Expression System Taxid: 55952
    Organism Scientific: STREPTOMYCES TOYOCAENSIS
    Organism Taxid: 55952

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 8)

Asymmetric/Biological Unit (6, 8)
No.NameCountTypeFull Name
10UZ1OTHER(2R)-AMINO(3-CHLORO-4-HYDROXYPHENYL)ETHANOIC ACID
23FG2OTHER(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
33MY1OTHER3-CHLORO-D-TYROSINE
4A3P1Ligand/IonADENOSINE-3'-5'-DIPHOSPHATE
5GHP2OTHER(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
6OMY1OTHER(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:103 , ARG A:130 , GHP C:404 , OMY C:406 , 3FG C:407BINDING SITE FOR RESIDUE 0UZ C 405
2AC2SOFTWARELYS A:12 , ALA A:13 , GLY A:14 , GLY A:15 , HIS A:16 , TRP A:17 , ARG A:90 , SER A:98 , ARG A:101 , TYR A:163 , CYS A:196 , THR A:197 , LEU A:198 , MET A:201BINDING SITE FOR RESIDUE A3P A 301

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:20 -A:196
2B:20 -B:196

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
10uz C:405 -Omy C:406

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EEC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EEC)

(-) Exons   (0, 0)

(no "Exon" information available for 4EEC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhhh...........eeeee.....hhhhhhhh..eeeeeeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh............hhhhhhhhhh.hhhhhh...eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eec A   2 GSMCWIASYPKAGGHWLRCMLTSYVTGEPVETWPGIQAGVPHLEGLLRDGEAPSADPDEQVLLATHFTADRPVLRFYRESTAKVVCLIRNPRDAMLSLMRMKGIPPEDVEACRKIAETFIADEGFSSVRIWAGEGSWPENIRSWTDSVHESFPNAAVLAVRYEDLRKDPEGELWKVVDFLELGGRDGVADAVANCTLERMREMEERSKLLGLETTLPFVKSLKFMGDDIEKAYADLLHGETDFAHYARLYGYA 269
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211    || 236       246       256       266   
                                                                                                                                                                                                                                                216|  ||                                 
                                                                                                                                                                                                                                                 226  ||                                 
                                                                                                                                                                                                                                                    229|                                 
                                                                                                                                                                                                                                                     236                                 


Chain B from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhh...........eeeee.....hhhhhhhh..eeeeeeee.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh............hhhhhhhhhh.hhhhh....eeeeeehhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eec B   2 GSMCWIASYPKAGGHWLRCMLTSYVTGEPVETWPGIQAGVPHLEGLLRDGEAPSADPDEQVLLATHFTADRPVLRFYRESTAKVVCLIRNPRDAMLSLMRMKGIPPEDVEACRKIAETFIADEGFSSVRIWAGEGSWPENIRSWTDSVHESFPNAAVLAVRYEDLRKDPEGELWKVVDFLELGGRDGVADAVANCTLERMREMEERSKKSLKFMGDDIEKAYADLLHGETDFAHYARLYGYA 269
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       237       247       257       267  
                                                                                                                                                                                                                                         209|                                 
                                                                                                                                                                                                                                          236                                 


Chain C from PDB  Type:OTHER  Length:7
                                       
                 4eec C 401 xxxxxxx 407
                            |||||||
                          401-GHP||
                           402-3MY|
                            403-3FG
                             404-GHP
                              405-0UZ
                               406-OMY
                                407-3FG
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EEC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EEC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EEC)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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    0uz C:405 - Omy C:406   [ RasMol ]  
 

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  4eec
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  STAL_STRTO | Q8KLM3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STAL_STRTO | Q8KLM3: 2ov8 2ovb 2ovf

(-) Related Entries Specified in the PDB File

2ov8 STAL APO
2ovf STAL-PAP COMPLEX