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(-) Description

Title :  CRYSTAL STRUCTURE OF ISPE (4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE) FROM MYCOBACTERIUM ABCESSUS, BOUND TO ATP
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  26 Mar 12  (Deposition) - 04 Apr 12  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Ssgcid, Nih, Niaid, Sbri, Emerald Biostructures, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
PubMed-ID: 25613812  |  Reference-DOI: 10.1016/J.TUBE.2014.12.003

(-) Compounds

Molecule 1 - 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE
    Chains: A
    EC Number: 2.7.1.148
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ISPE, MAB_1139
    Organism Scientific: MYCOBACTERIUM ABSCESSUS
    Organism Taxid: 561007
    Strain: ATCC 19977 / DSM 44196
    Synonym: ISPE, CMK, 4-(CYTIDINE-5'-DIPHOSPHO)-2-C-METHYL-D-ERYTHRITOL KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:73 , ARG A:77 , ASN A:78 , LEU A:79 , LYS A:103 , VAL A:107 , ALA A:108 , GLY A:109 , GLY A:110 , MET A:111 , ALA A:112 , GLY A:113 , GLY A:114 , ASP A:117 , ASP A:148 , THR A:189 , HOH A:508 , HOH A:514 , HOH A:516 , HOH A:518 , HOH A:520 , HOH A:536 , HOH A:560 , HOH A:568 , HOH A:574 , HOH A:623 , HOH A:655 , HOH A:683BINDING SITE FOR RESIDUE ATP A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ED4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:266 -Pro A:267
2Gly A:300 -Pro A:301

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ED4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ED4)

(-) Exons   (0, 0)

(no "Exon" information available for 4ED4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:299
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeeeeeeee......eeeeeeeeeeeeeeeeee....eeeeee...........hhhhhhhhhhhhhh.....eeeeeee........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhh.eeeee....eeee......eeeeeee.....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhee.hhhhhhhhh.hhhhhhhhhhhh...eeee......eeeee.hhhhhhhhhhhhhhh....eeeeeee.....ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ed4 A   6 SDWVPTGAVTVRAPGKVNLYLAVGDLYHELTTVFHAVSLADDVTVRDADVLSIDVVGQGEGTVPTDERNLAWQAAELFADHVGRAPDVSIFINKDIPVAGGMAGGSADAAAVLVAMNELWHAGVPRRDLHHLAAQLGSDVPFALHGGTALGTGRGEQLATVLARNVFHWVFAFADGGLATPQVFKEIDRLRENGDPPRLAEADELLGALAAGDARRLAPLLGNELQAAAVSLNPELRRTLRAGESAGALAGIVSGSGPTCAFLCTSADDAVQVSAELAGAGVCRTVRVASGPVHGAQVI 308
                                    15        25     || 39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299         
                                                    31|                                                                                                                                                                                                                                                                                
                                                     36
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ED4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ED4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ED4)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B1MKD5_MYCA9 | B1MKD5: 4dxl 4emd

(-) Related Entries Specified in the PDB File

4dxl WITH ATP AND CMP BOUND RELATED ID: SSGCID-MYABA.00725.A RELATED DB: TARGETTRACK