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(-) Description

Title :  COBRA NGF IN COMPLEX WITH LIPID
 
Authors :  T. Jiang, F. Wang, Q. Tong
Date :  26 Mar 12  (Deposition) - 12 Sep 12  (Release) - 12 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cobra Ngf, Unknown Lipid, Hormone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Tong, F. Wang, H. Z. Zhou, H. L. Sun, H. Song, Y. Y. Shu, Y. Gong, W. T. Zhang, T. X. Cai, F. Q. Yang, J. Tang, T. Jiang
Structural And Functional Insights Into Lipid-Bound Nerve Growth Factors
Faseb J. V. 26 3811 2012
PubMed-ID: 22649032  |  Reference-DOI: 10.1096/FJ.12-207316

(-) Compounds

Molecule 1 - VENOM NERVE GROWTH FACTOR
    Chains: A, B
    Organism Common: CHINESE COBRA
    Organism Scientific: NAJA ATRA
    Organism Taxid: 8656
    Synonym: VNGF

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1L441Ligand/Ion(2S)-1-HYDROXY-3-(TETRADECANOYLOXY)PROPAN-2-YLDOCOSANOATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:42 , TYR A:47 , LYS A:48 , GLU A:49 , TYR A:50 , TYR A:77 , THR A:79 , LYS A:86 , TRP A:97 , PHE A:99 , HOH A:302 , HOH A:308 , GLU B:10 , TRP B:20 , TYR B:47 , TYR B:50 , LYS B:86 , TRP B:97BINDING SITE FOR RESIDUE L44 A 200

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:14 -A:78
2A:56 -A:106
3A:66 -A:108
4B:14 -B:78
5B:56 -B:106
6B:66 -B:108

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EC7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EC7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EC7)

(-) Exons   (0, 0)

(no "Exon" information available for 4EC7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains d4ec7a_ A: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee...eeeeee...eee.....eeee..eeee..eeee..eeeeee.................eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4ec7 A   9 GEHSVCDSVSAWVTKTTATDIKGNTVTVMENVNLDNKVYKEYFFETKCKNPNPEPSGCRGIDSSHWNSYCTETDTFIKALTMEGNQASWRFIRIETACVCVITKKKGN 116
                                    18        28        38        48        58        68        78        88        98       108        


Chain B from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains d4ec7b_ B: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee...eeeeee...eee.....eeee..eee....eee..eeeeee...................eeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4ec7 B   9 GEHSVCDSVSAWVTKTTATDIKGNTVTVMENVNLDNKVYKEYFFETKCKNPNPEPSGCRGIDSSHWNSYCTETDTFIKALTMEGNQASWRFIRIETACVCVITKKKGN 116
                                    18        28        38        48        58        68        78        88        98       108
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EC7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EC7)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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