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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ECTODOMAIN OF A RECEPTOR LIKE KINASE
 
Authors :  J. Chai, T. Liu, Z. Han, J She, J. Wang
Date :  26 Mar 12  (Deposition) - 27 Jun 12  (Release) - 27 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym./Biol. Unit :  A
Keywords :  Pathogen-Associated Molecular Patterns, Pattern Recognition Receptors, Chitin Elicitor Receptor Kinase 1, Lysm, Lysine Motif, Chitin Oligomer, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Liu, Z. Liu, C. Song, Y. Hu, Z. Han, J. She, F. Fan, J. Wang, C. Jin, J. Chang, J. M. Zhou, J. Chai
Chitin-Induced Dimerization Activates A Plant Immune Receptor.
Science V. 336 1160 2012
PubMed-ID: 22654057  |  Reference-DOI: 10.1126/SCIENCE.1218867

(-) Compounds

Molecule 1 - CHITIN ELICITOR RECEPTOR KINASE 1
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF-21
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 25-230
    Gene: CERK1, AT3G21630, AT3G21630
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:112 , TYR A:113 , GLU A:114 , MET A:127 , GLN A:131 , ALA A:138 , NAG A:813 , HOH A:918 , HOH A:996BINDING SITE FOR RESIDUE NAG A 812
2AC2SOFTWAREASP A:111 , ALA A:138 , THR A:139 , ASN A:140 , ILE A:141 , NAG A:812 , NAG A:814BINDING SITE FOR RESIDUE NAG A 813
3AC3SOFTWAREVAL A:107 , ARG A:108 , GLU A:110 , ASP A:111 , ILE A:141 , LEU A:143 , NAG A:813 , NAG A:815 , HOH A:989 , HOH A:1052 , HOH A:1072BINDING SITE FOR RESIDUE NAG A 814
4AC4SOFTWAREASN A:140 , NAG A:814 , HOH A:1024 , HOH A:1052BINDING SITE FOR RESIDUE NAG A 815
5AC5SOFTWAREASN A:52 , SER A:54 , ASN A:216 , HOH A:1007 , HOH A:1029 , HOH A:1032 , HOH A:1050 , HOH A:1108 , HOH A:1135 , HOH A:1146BINDING SITE FOR LINKED RESIDUES A 801 TO 802
6AC6SOFTWARETYR A:37 , GLU A:39 , ILE A:118 , ALA A:122 , ASN A:123 , ARG A:173 , HOH A:985 , HOH A:1054 , HOH A:1082 , HOH A:1114BINDING SITE FOR LINKED RESIDUES A 803 TO 804
7AC7SOFTWARETHR A:125 , SER A:129 , LEU A:150 , ASN A:152 , HOH A:972 , HOH A:1074BINDING SITE FOR LINKED RESIDUES A 805 TO 806
8AC8SOFTWAREASN A:62 , ASP A:64 , LYS A:76 , GLN A:94 , PRO A:95 , ASN A:102 , ARG A:133 , ASN A:148 , HOH A:998 , HOH A:1028 , HOH A:1038 , HOH A:1069 , HOH A:1091 , HOH A:1177BINDING SITE FOR LINKED RESIDUES A 807 TO 811

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:25 -A:93
2A:29 -A:155
3A:91 -A:153

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EBZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EBZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EBZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4EBZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee.....hhhhhhhhh...........hhhhhh...............eeeeee..eee...eeeeeeeee.....hhhhhhhh......hhhhhhhhh..hhhhh....eeeeeee..............eeeee.....hhhhhhhhhh.hhhhhhhhh..........eeeee............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ebz A  25 CRTSCPLALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPFPATNIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNFNSGNGIVYVPGRDPNGAFPPFKS 224
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EBZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EBZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EBZ)

(-) Gene Ontology  (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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  4ebz
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CERK1_ARATH | A8R7E6: 4eby

(-) Related Entries Specified in the PDB File

4eby