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(-) Description

Title :  HCV NS5B IN COMPLEX WITH IDX375
 
Authors :  C. B. Dousson, J. -L. Paparin, D. Surleraux, M. Augustin, M. Blaesse, S. S. Krapp, C. Wenzkowski
Date :  22 Mar 12  (Deposition) - 27 Mar 13  (Release) - 27 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. B. Dousson, J. -L. Paparin, D. Surleraux, M. Augustin, M. Blaesse, S. Hoeppner, S. Krapp, C. Wenzkowski
Hcv Ns5B In Complex With Idx375
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RNA-DIRECTED RNA POLYMERASE
    Chains: A, B
    EC Number: 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2420-2981
    Organism Common: HCV
    Organism Scientific: HEPATITIS C VIRUS SUBTYPE 1B
    Organism Taxid: 31647
    Synonym: NS5B, P68

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric Unit (4, 15)
No.NameCountTypeFull Name
10NQ2Ligand/IonN-{(1S)-3-[(5S)-5-TERT-BUTYL-1-(3,3-DIMETHYLBUTYL)-4-HYDROXY-2-OXO-2,5-DIHYDRO-1H-PYRROL-3-YL]-1-ETHOXY-1-OXIDO-1,4-DIHYDRO-2,4,1-BENZODIAZAPHOSPHININ-7-YL}METHANESULFONAMIDE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
4SO48Ligand/IonSULFATE ION
Biological Unit 1 (4, 11)
No.NameCountTypeFull Name
10NQ1Ligand/IonN-{(1S)-3-[(5S)-5-TERT-BUTYL-1-(3,3-DIMETHYLBUTYL)-4-HYDROXY-2-OXO-2,5-DIHYDRO-1H-PYRROL-3-YL]-1-ETHOXY-1-OXIDO-1,4-DIHYDRO-2,4,1-BENZODIAZAPHOSPHININ-7-YL}METHANESULFONAMIDE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
4SO46Ligand/IonSULFATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
10NQ1Ligand/IonN-{(1S)-3-[(5S)-5-TERT-BUTYL-1-(3,3-DIMETHYLBUTYL)-4-HYDROXY-2-OXO-2,5-DIHYDRO-1H-PYRROL-3-YL]-1-ETHOXY-1-OXIDO-1,4-DIHYDRO-2,4,1-BENZODIAZAPHOSPHININ-7-YL}METHANESULFONAMIDE
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO42Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:193 , ARG A:200 , SER A:288 , ASN A:291 , TYR A:316 , GLY A:317 , ASP A:318 , CYS A:366 , SER A:368 , ASN A:411 , MET A:414 , TYR A:415 , GLN A:446 , ILE A:447 , TYR A:448 , GLY A:449 , SER A:556 , HOH A:728 , HOH A:879 , HOH A:1030BINDING SITE FOR RESIDUE 0NQ A 601
02AC2SOFTWAREARG A:505 , VAL A:530 , ARG A:531 , THR A:532BINDING SITE FOR RESIDUE SO4 A 602
03AC3SOFTWAREARG A:48 , CYS A:223 , HOH A:973BINDING SITE FOR RESIDUE SO4 A 603
04AC4SOFTWAREGLY A:516 , ARG A:517 , HOH A:886BINDING SITE FOR RESIDUE SO4 A 604
05AC5SOFTWAREHIS A:475 , SER A:476 , SO4 A:607 , HOH A:798 , HOH A:976BINDING SITE FOR RESIDUE SO4 A 605
06AC6SOFTWAREARG A:65 , HOH A:955 , HOH A:1076 , LYS B:79 , ASP B:244BINDING SITE FOR RESIDUE SO4 A 606
07AC7SOFTWARELEU A:474 , HIS A:475 , TYR A:477 , SO4 A:605 , HOH A:810BINDING SITE FOR RESIDUE SO4 A 607
08AC8SOFTWAREGLU A:143 , ARG A:386 , THR A:390 , ARG A:394 , HOH A:870BINDING SITE FOR RESIDUE PEG A 608
09AC9SOFTWARETYR A:4 , ARG A:48 , LEU A:159 , VAL A:161 , ASP A:225 , ARG A:280 , ALA A:281 , SER A:282 , HOH A:1098BINDING SITE FOR RESIDUE PEG A 609
10BC1SOFTWARELYS A:79 , HOH A:1046 , ARG B:65BINDING SITE FOR RESIDUE EDO A 610
11BC2SOFTWARELEU A:82 , LEU A:83BINDING SITE FOR RESIDUE EDO A 611
12BC3SOFTWAREPHE B:193 , ARG B:200 , SER B:288 , ASN B:291 , TYR B:316 , GLY B:317 , ASP B:318 , CYS B:366 , SER B:368 , ASN B:411 , MET B:414 , TYR B:415 , GLN B:446 , ILE B:447 , TYR B:448 , GLY B:449 , SER B:556 , HOH B:706 , HOH B:755 , HOH B:850BINDING SITE FOR RESIDUE 0NQ B 601
13BC4SOFTWAREPRO A:22 , ILE A:23 , ASN A:24 , ARG A:401 , ARG B:114BINDING SITE FOR RESIDUE SO4 B 602
14BC5SOFTWAREARG B:48 , CYS B:223BINDING SITE FOR RESIDUE SO4 B 603
15BC6SOFTWAREGLU B:143 , ARG B:386 , THR B:390 , ARG B:394BINDING SITE FOR RESIDUE PEG B 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EAW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EAW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EAW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EAW)

(-) Exons   (0, 0)

(no "Exon" information available for 4EAW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:559
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4eawa_ A: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.................hhhhhhhh.hhh.eee.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.......hhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee..eee........eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeee.....eeeee........hhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeee..hhhhhhhhhhhhhhhhhhh............hhhhh.....eeeeee.....eeeeee..hhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh......eeeee..eeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhh...............ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eaw A   1 SMSYTWTGALITPCAAEESKLPINPLSNSLLRHHNMVYATTSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLSIEEACKLTPPHSAKSKFGYGAKDVRNLSSRAVNHIRSVWEDLLEDTETPIDTTIMAKSEVFCVQPGRKPARLIVFPDLGVRVCEKMALYDVVSTLPQAVMGSSYGFQYSPKQRVEFLVNTWKSKKCPMGFSYDTRCFDSTVTESDIRVEESIYQCCDLAPEARQAIRSLTERLYIGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKATAACRAAKLQDCTMLVYGDDLVVICESAGTQEDAAALRAFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWETARHTPINSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFTLHSYSPGEINRVASCLRKLGVPPLRTWRHRARSVRAKLLSQGGRAATCGRYLFNWAVRTKLKLTPIPAASQLDLSGWFVAGYSGGDIYH 562
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553         
                                                                                                                                                                              149|                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                               153                                                                                                                                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:559
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4eawb_ B: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.................hhhhhhhh.hhh.eee.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.......hhhhhhhh............hhhhhhh.hhhhhhhhhhhhhhhhhh......eeeee...eee.........eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeee.....eeeee........hhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeee..hhhhhhhhhhhhhhhhhhh............hhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeee..eeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh.................ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eaw B   1 SMSYTWTGALITPCAAEESKLPINPLSNSLLRHHNMVYATTSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLSIEEACKLTPPHSAKSKFGYGAKDVRNLSSRAVNHIRSVWEDLLEDTETPIDTTIMAKSEVFCVQPGRKPARLIVFPDLGVRVCEKMALYDVVSTLPQAVMGSSYGFQYSPKQRVEFLVNTWKSKKCPMGFSYDTRCFDSTVTESDIRVEESIYQCCDLAPEARQAIRSLTERLYIGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKATAACRAAKLQDCTMLVYGDDLVVICESAGTQEDAAALRAFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWETARHTPINSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFTLHSYSPGEINRVASCLRKLGVPPLRTWRHRARSVRAKLLSQGGRAATCGRYLFNWAVRTKLKLTPIPAASQLDLSGWFVAGYSGGDIYH 562
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553         
                                                                                                                                                                              149|                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                               153
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EAW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EAW)

(-) Gene Ontology  (79, 79)

Asymmetric Unit(hide GO term definitions)

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  4eaw
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  POLG_HCVJ4 | O92972
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  2.7.7.48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_HCVJ4 | O92972: 1nb4 1nb6 1nb7 2f55 2mts 2xhu 2xhv 2xhw 2yoj 3cso 3gnv 3gnw 3gol 3hky 3lkh 3mwv 3mww 3ska 3ske 3skh 3tyq 3tyv 3u4o 3u4r 3uph 3upi 4dru 4gmc 4iz0 4j02 4j04 4j06 4j08 4j0a 4jjs 4jju 4jtw 4jty 4jtz 4ju1 4ju2 4ju3 4ju4 4ju6 4ju7 4jvq 4jy0 4jy1 4mz4 4oow 4ry4 4ry5 4ry6 4ry7 5czb 5nph

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