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(-) Description

Title :  CRYSTAL STRUCTURE OF AMINOGLYCOSIDE ANTIBIOTIC 6'-N-ACETYLTRANSFERASE AAC(6')-IH FROM ACINETOBACTER BAUMANNII
 
Authors :  P. J. Stogios, G. Minasov, A. Dong, E. Evdokimova, V. Yim, P. Courvalin, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date :  20 Mar 12  (Deposition) - 04 Apr 12  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Antibiotic Resistance, Center For Structural Genomics Of Infectious Diseases (Csgid), Niaid, National Institute Of Allergy And Infectious Diseases, Gnat Superfamily, Gcn5-Related N- Acetyltransferase Superfamily, N-Acetyltransferase Fold, Aminoglycoside Antibiotic 6'-N-Acetyltransferase, Aminoglycoside Antibiotics, Acetyl Coenzyme A, Coenzyme A, Intracellular, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Stogios, M. L. Kuhn, E. Evdokimova, M. Law, P. Courvalin, A. Savchenko
Structural And Biochemical Characterization Of Acinetobacte Spp. Aminoglycoside Acetyltransferases Highlights Functiona And Evolutionary Variation Among Antibiotic Resistance Enzymes.
Acs Infect Dis. V. 3 132 2017
PubMed-ID: 27785912  |  Reference-DOI: 10.1021/ACSINFECDIS.6B00058

(-) Compounds

Molecule 1 - AAC(6')-IH PROTEIN
    Chains: A, B
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AAC(6')-IH
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 470
    Strain: BM2686

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1CL7Ligand/IonCHLORIDE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:40BINDING SITE FOR RESIDUE CL A 202
2AC2SOFTWAREVAL A:83 , ARG A:88 , MET A:126BINDING SITE FOR RESIDUE CL A 203
3AC3SOFTWAREGLN B:10BINDING SITE FOR RESIDUE CL B 201
4AC4SOFTWAREALA B:40BINDING SITE FOR RESIDUE CL B 203
5AC5SOFTWAREVAL B:83 , ARG B:88 , MET B:126BINDING SITE FOR RESIDUE CL B 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E8O)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:73 -Pro A:74
2Ser B:73 -Pro B:74

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E8O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E8O)

(-) Exons   (0, 0)

(no "Exon" information available for 4E8O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains d4e8oa_ A: automated matches                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhh..hhhhhhhhhhhhhh...eeeeeee.....eeeeeeeeee...........eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.....ee......hhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e8o A   0 GMNIMPISESQLSDWLALRCLLWPDHEDVHLQEMRQLITQAHRLQLLAYTDTQQAIAMLEASIRYEYVNGTQTSPVAFLEGIFVLPEYRRSGIATGLVQQVEIWAKQFACTEFASDAALDNQISHAMHQALGFHETERVVYFKKNIG 146
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       


Chain B from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains d4e8ob_ B: automated matches                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....eeeeeee.....eeeeeeeeee...........eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh....ee......hhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e8o B  -1 QGMNIMPISESQLSDWLALRCLLWPDHEDVHLQEMRQLITQAHRLQLLAYTDTQQAIAMLEASIRYEYVNGTQTSPVAFLEGIFVLPEYRRSGIATGLVQQVEIWAKQFACTEFASDAALDNQISHAMHQALGFHETERVVYFKKNIG 146
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E8O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E8O)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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