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(-) Description

Title :  2.0A CRYSTAL STRUCTURE OF A GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE FROM YERSINIA PESTIS CO92
 
Authors :  J. S. Brunzelle, W. Wawrzak, O. Onopriyenko, W. F. Anderson, A. Savchen For Structural Genomics Of Infectious Diseases (Csgid)
Date :  16 Mar 12  (Deposition) - 04 Apr 12  (Release) - 04 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Porphyrin Biosynthesis, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Brunzelle, W. Wawrzak, O. Onopriyenko, W. F. Anderson, A. Savchenko, Center For Structural Genomics Of Infectious Diseases
2. 0A Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
    Chains: A
    EC Number: 5.4.3.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HEML, YPDSF_2968
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 386656
    Strain: CO92
    Synonym: GSA, GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE, GSA-AT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric Unit (3, 19)
No.NameCountTypeFull Name
1MSE17Mod. Amino AcidSELENOMETHIONINE
2NA1Ligand/IonSODIUM ION
3NO31Ligand/IonNITRATE ION
Biological Unit 1 (2, 36)
No.NameCountTypeFull Name
1MSE34Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION
3NO32Ligand/IonNITRATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:329 , GLU A:388 , HOH A:646 , HOH A:679 , HOH A:778 , HOH A:876 , HOH A:932BINDING SITE FOR RESIDUE NA A 501
2AC2SOFTWARESER A:114 , GLY A:115 , VAL A:239 , GLY A:264 , LYS A:265 , VAL A:273 , HOH A:730 , HOH A:905BINDING SITE FOR RESIDUE NO3 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E77)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:287 -Pro A:288

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E77)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E77)

(-) Exons   (0, 0)

(no "Exon" information available for 4E77)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:406
                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4e77a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhh.........eeeee..eeee....eeee.hhhhh.......hhhhhhhhhhhhh........hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhh..eeeee............hhhhhh.eeee...hhhhhhhhhhhh...eeeeee..............hhhhhhhhhhhhhh.eeeeee..........hhhhhh.....eeeee.hhhh....eeeeehhhhhh..............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeeee........hhhhhhh.hhhhhhhhhhhhhhh.ee........ee.....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e77 A   1 mSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPmILGHNHPAIRQAVIEAVERGLSFGAPTEmEVKmAQLVTDLVPTmDmVRmVNSGTEATmSAIRLARGYTGRDKIIKFEGCYHGPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNmNCIPPLPEFLPGLRALCDEFGALLIIDEVmTGFRVALAGAQDYYHVIPDLTCLGKIIGGGmPVGAFGGRREVmNALAPTGPVYQTLSGNPIAmAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGmFGLFFTNADTVTCYQDVmNCDVERFKRFFHLmLEEGVYLAPSAFEAGFmSLAHSNEDIQKTVNAARRCFAKL 426
                            |       10        20        30        40        50        60 |      70        80        90|   |  100     | 110|      120       130       140   ||  168       178       188       198       208 |     218       228       238 |     248       258       268  |    278    |  288     ||300    |  310       320       330       340       350   |   360       370 |     380     | 390       400  |    410       420      
                            |                                                           62-MSE                       91-MSE        106-MSE|      120-MSE                 144|                                            210-MSE                       240-MSE                        271-MSE     283-MSE    294|     305-MSE                                          354-MSE           372-MSE       386-MSE          403-MSE                   
                            1-MSE                                                                                        95-MSE      108-MSE                              163                                                                                                                                 297                                                                                                                                 
                                                                                                                                        111-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E77)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E77)

(-) Gene Ontology  (10, 19)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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