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(-) Description

Title :  TYPE II CITRATE SYNTHASE FROM VIBRIO VULNIFICUS.
 
Authors :  J. Osipiuk, M. Gu, K. Kwon, W. F. Anderson, A. Joachimiak, Center For S Genomics Of Infectious Diseases (Csgid)
Date :  16 Mar 12  (Deposition) - 28 Mar 12  (Release) - 28 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Biol. Unit 2:  A  (2x)
Keywords :  Structural Genomics, Type Ii Citrate Synthase, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, M. Gu, K. Kwon, W. F. Anderson, A. Joachimiak
Type Ii Citrate Synthase From Vibrio Vulnificus.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CITRATE SYNTHASE
    Chains: A
    EC Number: 2.3.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GLTA, VV1_0162
    Organism Scientific: VIBRIO VULNIFICUS
    Organism Taxid: 216895
    Strain: CMCP6

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric Unit (2, 20)
No.NameCountTypeFull Name
1FMT4Ligand/IonFORMIC ACID
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 120)
No.NameCountTypeFull Name
1FMT24Ligand/IonFORMIC ACID
2MSE96Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 40)
No.NameCountTypeFull Name
1FMT8Ligand/IonFORMIC ACID
2MSE32Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:56 , GLU A:398 , ASP A:402BINDING SITE FOR RESIDUE FMT A 501
2AC2SOFTWAREGLU A:85 , MSE A:425 , HOH A:645BINDING SITE FOR RESIDUE FMT A 502
3AC3SOFTWAREGLU A:116 , HIS A:123 , ARG A:127 , GLN A:183BINDING SITE FOR RESIDUE FMT A 503
4AC4SOFTWARESER A:193BINDING SITE FOR RESIDUE FMT A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E6Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E6Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E6Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4E6Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4e6ya_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.......eeeeee.......ee....hhhhh....hhhhh.........eeee....eeee..eehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh........hhhhhhhhhhhhhhh.....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4e6y A   3 DKKATLHVEGKAPIELPImEGSLGTPVIDVRKLGANGYFTFDPGFLATASCESQITYIDGGKGILLHRGYPIDQLANNADYLEVCYILLYGEAPTREQYEKFKTTVTRHTmVHEQIASFFHGFRRDAHPmAVmCGVVGALAAFYHDSLDINNDLHREITAYRLLSKmPTLAAmCYKYSTGQPFIYPRNDLSYAENFLHmmFATPCEEYEVNPVVARAmDKIFTLHADHEQNASTSTVRLAGSSGANPFACIAAGIASLWGPAHGGANEACLKmLEEIGSVDNIPEYVDRAKDKDDPFRLmGFGHRVYKNYDPRATVmRETCHEVLKELNIQDPLLDVAmELERIALSDEYFVSKKLYPNVDFYSGIILKAIGIPVSmFTVIFAISRTIGWIAHWNEmHSDPLNRIGRPRQLYTGEVQRDFQPmHER 428
                                    12        22        32        42        52        62        72        82        92       102       112|      122       132  |    142       152       162      |172  |    182       192       202       212       222       232       242       252       262       272  |    282       292       302       312      |322       332       342       352       362       372      |382       392      |402       412       422  |   
                                             21-MSE                                                                                     113-MSE            132-MSE                              169-MSE |                       201-MSE            220-MSE                                                275-MSE                    302-MSE          319-MSE               341-MSE                               379-MSE             399-MSE                   425-MSE
                                                                                                                                                              135-MSE                                 175-MSE                    202-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E6Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E6Y)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4E6Y)

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 Related Entries

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