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(-) Description

Title :  UNPHOSPHORYLATED STAT3B CORE PROTEIN BINDING TO DSDNA
 
Authors :  G. W. Collie, G. N. Parkinson, R. Shah
Date :  15 Mar 12  (Deposition) - 06 Mar 13  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.58
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Sh2 Domain, Protein Dna Complex, Signal Transducer, Activator Of Transcription, Duplex Dna, Nucleus, Cytosol, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Nkansah, R. Shah, G. W. Collie, G. N. Parkinson, J. Palmer, K. M. Rahman, T. T. Bui, A. F. Drake, J. Husby, S. Neidle, G. Zinzalla, D. E. Thurston, A. F. Wilderspin
Observation Of Unphosphorylated Stat3 Core Protein Binding To Target Dsdna By Pemsa And X-Ray Crystallography.
Febs Lett. V. 587 833 2013
PubMed-ID: 23434585  |  Reference-DOI: 10.1016/J.FEBSLET.2013.01.065

(-) Compounds

Molecule 1 - DNA (5'- D(*TP*GP*CP*AP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*CP*T)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC
    Organism Taxid: 32630
    Other Details: TOP STRAND M67
    Other Details - Source: CHEMICALLY SYNTHESISED DNA SEQUENCE
    Synthetic: YES
 
Molecule 2 - SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-32A (+)
    Expression System Strain: BL21(DE3)ROSETTA
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: STAT3 CORE FRAGMENT, RESIDUES (127-722)
    Gene: APRF, STAT3, STAT3B
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ACUTE-PHASE RESPONSE FACTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4E68)

(-) Sites  (0, 0)

(no "Site" information available for 4E68)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E68)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:703 -Pro A:704

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E68)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E68)

(-) Exons   (0, 0)

(no "Exon" information available for 4E68)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:559
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhheeeeeeee.........eee....eeeeeee...hhhhh...eeeeee...............eeee...eee.....hhhhheeeeeeeeeeee...............hhhhh...eeeeeeeee..eeeeeeee....eee.hhhhhhhhhhhhhhhhhhh......hhhhh...eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh........eehhhhhh.........hhhhhhhhhhhhh...hhhhhh........hhhhhhh...........eee........eee...................hhhhhh..hhhhhhh....ee...ee..................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4e68 A  136 VVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLLVKFPELNYQLKIKVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGSLSAEFKHLTLREQRCGNGGRANCDASLIVTEELHLITFETEVYHQGLKIDLETHSLPVVVISNICQMPNAWASILWYNMLTNNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTLAEKLLGPGVNYSGCQITWAKFCKENMAGKGFSFWVWLDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKYCRAAPYLKTKFICVTPF  716
                                   145       155       165       175       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684   ||  707         
                                                                          184|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           688|              
                                                                           194                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            702              


Chain B from PDB  Type:DNA  Length:18
                                                   
                4e68 B 1001 TGCATTTCCCGTAAATCT 1018
                                  1010
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E68)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E68)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E68)

(-) Gene Ontology  (88, 88)

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  Cis Peptide Bonds
    Ala A:703 - Pro A:704   [ RasMol ]  
 
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  4e68
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STAT3_MOUSE | P42227: 1bg1 3cwg 4zia

(-) Related Entries Specified in the PDB File

1bg1 PHOSPHORYLATED VERSION OF THE SAME COMPLEX