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(-) Description

Title :  PMP-BOUND FORM OF AMINOTRANSFERASE CRYSTAL STRUCTURE FROM VIBRIO FLUVIALIS
 
Authors :  K. S. Midelfort, R. Kumar, S. Han, M. J. Karmilowicz, K. Mcconnell, D. K. A. Mistry, J. S. Chang, M. Anderson, A. Vilalobos, J. Minshull, S. Govi J. W. Wong
Date :  10 Mar 12  (Deposition) - 10 Oct 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B,C,D  (1x)
Keywords :  Aminotransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. S. Midelfort, R. Kumar, S. Han, M. J. Karmilowicz, K. Mcconnell, D. K. Gehlhaar, A. Mistry, J. S. Chang, M. Anderson, A. Villalobos, J. Minshull, S. Govindarajan, J. W. Wong
Redesigning And Characterizing The Substrate Specificity An Activity Of Vibrio Fluvialis Aminotransferase For The Synthesis Of Imagabalin.
Protein Eng. Des. Sel. V. 26 25 2013
PubMed-ID: 23012440  |  Reference-DOI: 10.1093/PROTEIN/GZS065

(-) Compounds

Molecule 1 - PYRUVATE TRANSAMINASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: VIBRIO FLUVIALIS
    Organism Taxid: 676

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 65)

Asymmetric Unit (5, 65)
No.NameCountTypeFull Name
1BEN3Ligand/IonBENZAMIDINE
2MSE52Mod. Amino AcidSELENOMETHIONINE
3NA4Ligand/IonSODIUM ION
4PMP4Ligand/Ion4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
5SO42Ligand/IonSULFATE ION
Biological Unit 1 (4, 32)
No.NameCountTypeFull Name
1BEN3Ligand/IonBENZAMIDINE
2MSE26Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PMP2Ligand/Ion4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
5SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 29)
No.NameCountTypeFull Name
1BEN-1Ligand/IonBENZAMIDINE
2MSE26Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PMP2Ligand/Ion4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
5SO41Ligand/IonSULFATE ION
Biological Unit 3 (4, 61)
No.NameCountTypeFull Name
1BEN3Ligand/IonBENZAMIDINE
2MSE52Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PMP4Ligand/Ion4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
5SO42Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:101 , GLU A:102 , SER A:104 , PHE A:106 , HOH A:693 , HOH A:765BINDING SITE FOR RESIDUE NA A 501
02AC2SOFTWAREGLN A:5 , SER A:6 , ALA A:9 , GLN B:5 , SER B:6 , ALA B:9BINDING SITE FOR RESIDUE SO4 A 502
03AC3SOFTWAREARG A:48 , TYR A:49 , ASP A:409 , LEU A:410 , GLY A:411 , LYS D:335 , ASP D:338 , ASN D:342 , GLU D:343BINDING SITE FOR RESIDUE BEN A 503
04AC4SOFTWARELYS A:335 , ASP A:338 , ASN A:342 , GLU A:343 , ARG D:48 , ASP D:409 , GLY D:411 , HOH D:816BINDING SITE FOR RESIDUE BEN A 504
05AC5SOFTWARESER A:116 , GLY A:117 , SER A:118 , TYR A:150 , HIS A:151 , GLU A:223 , ASP A:256 , VAL A:258 , ILE A:259 , LYS A:285 , HOH A:604 , HOH A:606 , HOH A:609 , HOH A:630 , PHE B:321 , THR B:322BINDING SITE FOR RESIDUE PMP A 505
06AC6SOFTWAREVAL B:101 , GLU B:102 , SER B:104 , PHE B:106 , HOH B:796 , HOH B:890BINDING SITE FOR RESIDUE NA B 501
07AC7SOFTWAREARG B:48 , LYS B:335 , ASP B:338 , ASN B:342 , GLU B:343 , ASP B:409 , GLY B:411BINDING SITE FOR RESIDUE BEN B 502
08AC8SOFTWAREPHE A:321 , THR A:322 , SER B:116 , GLY B:117 , SER B:118 , TYR B:150 , HIS B:151 , GLU B:223 , ASP B:256 , VAL B:258 , ILE B:259 , LYS B:285 , HOH B:602 , HOH B:611 , HOH B:615 , HOH B:654BINDING SITE FOR RESIDUE PMP B 503
09AC9SOFTWAREVAL C:101 , GLU C:102 , SER C:104 , PHE C:106 , HOH C:799 , HOH C:826BINDING SITE FOR RESIDUE NA C 501
10BC1SOFTWAREPRO C:4 , GLN C:5 , SER C:6 , ALA C:9 , GLN D:5 , SER D:6 , ALA D:9BINDING SITE FOR RESIDUE SO4 C 502
11BC2SOFTWARESER C:116 , GLY C:117 , SER C:118 , TYR C:150 , HIS C:151 , GLU C:223 , ASP C:256 , VAL C:258 , ILE C:259 , LYS C:285 , HOH C:605 , HOH C:619 , HOH C:631 , HOH C:635 , HOH C:705 , PHE D:321 , THR D:322BINDING SITE FOR RESIDUE PMP C 503
12BC3SOFTWAREVAL D:101 , GLU D:102 , SER D:104 , PHE D:106 , HOH D:687 , HOH D:767BINDING SITE FOR RESIDUE NA D 501
13BC4SOFTWAREPHE C:321 , THR C:322 , SER D:116 , GLY D:117 , SER D:118 , TYR D:150 , HIS D:151 , GLU D:223 , ASP D:256 , VAL D:258 , ILE D:259 , LYS D:285 , HOH D:610 , HOH D:615 , HOH D:639 , HOH D:649 , HOH D:800BINDING SITE FOR RESIDUE PMP D 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E3Q)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:171 -Pro A:172
2Leu B:171 -Pro B:172
3Leu C:171 -Pro C:172
4Leu D:171 -Pro D:172

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E3Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E3Q)

(-) Exons   (0, 0)

(no "Exon" information available for 4E3Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:452
 aligned with F2XBU9_VIBFL | F2XBU9 from UniProtKB/TrEMBL  Length:453

    Alignment length:452
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451  
         F2XBU9_VIBFL     2 NKPQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFAEVA 453
               SCOP domains d4e3qa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh.....hhhhhhhhh.eeeeeee..eeee....eeee.............hhhhhhhhhhhhhhh........eeehhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhh......eeeee.......hhhhhhhh.hhhhhhhh.....eeee...hhhhhh....hhhhhhhhhhhhhhhhhhhhh...eeeeee..............hhhhhhhhhhhhh...eeee............hhhhhh.....eeeehhhhhh.....eeeeehhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..eeeeee..........hhhhhhhhhhhhhhhhh.ee.eee..eeee......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e3q A   2 NKPQSWEARAETYSLYGFTDmPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNmVAGFDHKGLIDAAKAQYERFPGYHAFFGRmSDQTVmLSEKLVEVSPFDSGRVFYTNSGSEANDTmVKmLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASmTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVmGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPmGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVmNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFmWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQmDEmFDKLEKALDKVFAEVA 453
                                    11        21|       31        41        51       |61        71        81       |91   |   101       111       121  |  | 131       141       151       161       171       181       191       201       211       221    |  231       241       251       261       271       281       291  |    301       311       321       331       341       351       361       371      |381       391       401       411       421       431  |  | 441       451  
                                               22-MSE                               59-MSE                        89-MSE |                          124-MSE                             160-MSE                                                           226-MSE                                                             294-MSE                                        341-MSE                              378-MSE                                                 434-MSE               
                                                                                                                        95-MSE                         127-MSE                                                                                                                                                                                                                                                                                                               437-MSE            


Chain B from PDB  Type:PROTEIN  Length:450
 aligned with F2XBU9_VIBFL | F2XBU9 from UniProtKB/TrEMBL  Length:453

    Alignment length:450
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453
         F2XBU9_VIBFL     4 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFAEVA 453
               SCOP domains d4e3qb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhh.....hhhhhhhhh.eeeeeee..eeee....eeee.............hhhhhhhhhhhhhhh........eeehhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhh......eeeee.......hhhhhhhh.hhhhhhhh.....eeee...hhhhhh....hhhhhhhhhhhhhhhhhhhhh...eeeeee..............hhhhhhhhhhhhh...eeee............hhhhhh.....eeeehhhhhh.....eeeeehhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..eeeeee..........hhhhhhhhhhhhhhhhh.ee.eee..eeee......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4e3q B   4 PQSWEARAETYSLYGFTDmPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNmVAGFDHKGLIDAAKAQYERFPGYHAFFGRmSDQTVmLSEKLVEVSPFDSGRVFYTNSGSEANDTmVKmLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASmTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVmGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPmGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVmNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFmWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQmDEmFDKLEKALDKVFAEVA 453
                                    13        23        33        43        53     |  63        73        83     |  93 |     103       113       123|  |   133       143       153      |163       173       183       193       203       213       223  |    233       243       253       263       273       283       293|      303       313       323       333       343       353       363       373    |  383       393       403       413       423       433|  |   443       453
                                             22-MSE                               59-MSE                        89-MSE |                          124-MSE                             160-MSE                                                           226-MSE                                                             294-MSE                                        341-MSE                              378-MSE                                                 434-MSE               
                                                                                                                      95-MSE                         127-MSE                                                                                                                                                                                                                                                                                                               437-MSE            


Chain C from PDB  Type:PROTEIN  Length:451
 aligned with F2XBU9_VIBFL | F2XBU9 from UniProtKB/TrEMBL  Length:453

    Alignment length:451
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451 
         F2XBU9_VIBFL     2 NKPQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFAEV 452
               SCOP domains d4e3qc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh.....hhhhhhhhh.eeeeeee..eeee....eeee.............hhhhhhhhhhhhhhh........eeehhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhh......eeeee.......hhhhhhhh.hhhhhhhh.....eeee...hhhhhh....hhhhhhhhhhhhhhhhhhhhh...eeeeee..............hhhhhhhhhhhhh...eeee............hhhhhh.....eeeehhhhhh.....eeeeehhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..eeeeee..........hhhhhhhhhhhhhhhhh.ee.eee..eeee......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e3q C   2 NKPQSWEARAETYSLYGFTDmPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNmVAGFDHKGLIDAAKAQYERFPGYHAFFGRmSDQTVmLSEKLVEVSPFDSGRVFYTNSGSEANDTmVKmLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASmTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVmGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPmGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVmNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFmWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQmDEmFDKLEKALDKVFAEV 452
                                    11        21|       31        41        51       |61        71        81       |91   |   101       111       121  |  | 131       141       151       161       171       181       191       201       211       221    |  231       241       251       261       271       281       291  |    301       311       321       331       341       351       361       371      |381       391       401       411       421       431  |  | 441       451 
                                               22-MSE                               59-MSE                        89-MSE |                          124-MSE                             160-MSE                                                           226-MSE                                                             294-MSE                                        341-MSE                              378-MSE                                                 434-MSE              
                                                                                                                        95-MSE                         127-MSE                                                                                                                                                                                                                                                                                                               437-MSE           


Chain D from PDB  Type:PROTEIN  Length:452
 aligned with F2XBU9_VIBFL | F2XBU9 from UniProtKB/TrEMBL  Length:453

    Alignment length:452
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451  
         F2XBU9_VIBFL     2 NKPQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFAEVA 453
               SCOP domains d4e3qd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh.....hhhhhhhhh.eeeeeee..eeee....eeee.............hhhhhhhhhhhhhhh........eeehhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhh......eeeee.......hhhhhhhh.hhhhhhhh.....eeee...hhhhhh....hhhhhhhhhhhhhhhhhhhhh...eeeeee..............hhhhhhhhhhhhh...eeee............hhhhhh.....eeeehhhhhh.....eeeeehhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..eeeeee..........hhhhhhhhhhhhhhhhh.ee.eee..eeee......hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e3q D   2 NKPQSWEARAETYSLYGFTDmPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNmVAGFDHKGLIDAAKAQYERFPGYHAFFGRmSDQTVmLSEKLVEVSPFDSGRVFYTNSGSEANDTmVKmLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASmTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVmGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPmGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVmNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFmWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQmDEmFDKLEKALDKVFAEVA 453
                                    11        21|       31        41        51       |61        71        81       |91   |   101       111       121  |  | 131       141       151       161       171       181       191       201       211       221    |  231       241       251       261       271       281       291  |    301       311       321       331       341       351       361       371      |381       391       401       411       421       431  |  | 441       451  
                                               22-MSE                               59-MSE                        89-MSE |                          124-MSE                             160-MSE                                                           226-MSE                                                             294-MSE                                        341-MSE                              378-MSE                                                 434-MSE               
                                                                                                                        95-MSE                         127-MSE                                                                                                                                                                                                                                                                                                               437-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E3Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E3Q)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (F2XBU9_VIBFL | F2XBU9)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
    GO:0008483    transaminase activity    Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.

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4e3r