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(-) Description

Title :  PROTELOMERASE TELA COVALENTLY COMPLEXED WITH MUTATED SUBSTRATE DNA
 
Authors :  K. Shi, H. Aihara
Date :  05 Mar 12  (Deposition) - 13 Feb 13  (Release) - 13 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,C,D
Biol. Unit 1:  A,C,D  (2x)
Keywords :  Protelemorase, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Shi, W. M. Huang, H. Aihara
An Enzyme-Catalyzed Multistep Dna Refolding Mechanism In Hairpin Telomere Formation.
Plos Biol. V. 11 01472 2013
PubMed-ID: 23382649  |  Reference-DOI: 10.1371/JOURNAL.PBIO.1001472

(-) Compounds

Molecule 1 - PROTELOMERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TELA, ATU2523
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 176299
    Strain: C58 / ATCC 33970
 
Molecule 2 - DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3')
    Chains: C
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - DNA (5'- D(*CP*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3')
    Chains: D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ACD
Biological Unit 1 (2x): ACD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1DT1Ligand/IonTHYMIDINE-5'-MONOPHOSPHATE
2GOL1Ligand/IonGLYCEROL
3PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1DT-1Ligand/IonTHYMIDINE-5'-MONOPHOSPHATE
2GOL2Ligand/IonGLYCEROL
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:215 , HIS A:367 , THR A:407 , DT C:12 , DA C:13 , HOH C:206 , HOH C:215BINDING SITE FOR RESIDUE GOL C 101
2AC2SOFTWARELYS A:208 , THR A:401 , DA C:13 , DA D:19 , DT D:20BINDING SITE FOR RESIDUE DT D 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E0Y)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:419 -Arg A:420

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E0Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E0Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4E0Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
 aligned with Q7CWV1_AGRFC | Q7CWV1 from UniProtKB/TrEMBL  Length:442

    Alignment length:318
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412        
         Q7CWV1_AGRFC   103 YPKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRRPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSYMTYTLPEDRDNALAR 420
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhh........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhh.eeee..........eeeee................eeee...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh....hhhhhhhhhhh......hhhhhhh.eehhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4e0y A 103 YPKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRRPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSyMTYTLPEDRDNALAR 420
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402  |    412        
                                                                                                                                                                                                                                                                                                                                        405-PTR           


Chain C from PDB  Type:DNA  Length:13
                                             
                 4e0y C   1 CATAATAACAATA  13
                                    10   


Chain D from PDB  Type:DNA  Length:17
                                                 
                 4e0y D  17 TGATATTGTTATTATGT 101
                                    26     ||
                                          32|
                                          101
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E0Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E0Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E0Y)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4E0Y)

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    Ala A:419 - Arg A:420   [ RasMol ]  
 
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  4e0y
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7CWV1_AGRFC | Q7CWV1: 4dwp 4e0g 4e0j 4e0p 4e0z 4e10 4f41 4f43

(-) Related Entries Specified in the PDB File

4dwp 4e0g 4e0j 4e0p 4e0z 4e10