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(-) Description

Title :  1.76A X-RAY CRYSTAL STRUCTURE OF A PUTATIVE PHENAZINE BIOSYNTHESIS PHZC/PHZF PROTEIN FROM CLOSTRIDIUM DIFFICILE (STRAIN 630)
 
Authors :  J. S. Brunzelle, W. Wawrzak, M. Kudritska, W. F. Anderson, A. Savchenko For Structural Genomics Of Infectious Diseases (Csgid)
Date :  22 Feb 12  (Deposition) - 14 Mar 12  (Release) - 14 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Brunzelle, W. Wawrzak, M. Kudritska, W. F. Anderson, A. Savchenko, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 76A X-Ray Crystal Structure Of A Putative Phenazine Biosynthesis Phzc/Phzf Protein From Clostridium Difficile (Strain 630)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PHENAZINE BIOSYNTHESIS PHZC/PHZF PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CD1761, CD630_17610
    Organism Scientific: CLOSTRIDIUM DIFFICILE
    Organism Taxid: 272563
    Strain: 630

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1BTB2Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2NI1Ligand/IonNICKEL (II) ION
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1BTB4Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2NI-1Ligand/IonNICKEL (II) ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:70 , HIS A:71 , PHE A:113 , THR A:200 , GLY A:201 , SER A:202 , BTB A:302 , HOH A:482BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWAREGLU A:44 , ILE A:66 , CYS A:69 , HIS A:71 , TYR A:188 , ASP A:197 , THR A:200 , SO4 A:301 , NI A:303 , HOH A:506 , HOH A:560BINDING SITE FOR RESIDUE BTB A 302
3AC3SOFTWAREHIS A:71 , BTB A:302BINDING SITE FOR RESIDUE NI A 303
4AC4SOFTWAREASP A:67 , GLN A:96 , MET A:117 , GLU A:213BINDING SITE FOR RESIDUE BTB A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DUN)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
 aligned with Q186X0_PEPD6 | Q186X0 from UniProtKB/TrEMBL  Length:260

    Alignment length:259
                             1                                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249         
         Q186X0_PEPD6     - -MEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKGKGNYELRWFTPKAEIDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNGNLYEMIFPEIMPIEIELSPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKPNYAQLRKLTDWLGIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYWSEKLGKHKMVAAQLSNRGGIIQCEVLKDNTVKISGEAVLFMQGTIKI 258
               SCOP domains d4duna_ A: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee........eeeeeeee....hhhhhhhhhhhhh..eeeeeeee..eeeeeee....ee..hhhhhhhhhhhhhhhh.....eeeeee..eeeeeeee..eeeeeee....ee...hhhhhhhh.....eeee...eeee..hhhhhhhh..hhhhhh.......eeeeee.....eeeeeee....eee.....hhhhhhhhhhhhhh..eeeeee.....eeeeeee....eeeeee.eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dun A   0 AMEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKGKGNYELRWFTPKAEIDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNGNLYEMIFPEIMPIEIELSPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKPNYAQLRKLTDWLGIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYWSEKLGKHKMVAAQLSNRGGIIQCEVLKDNTVKISGEAVLFMQGTIKI 258
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DUN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DUN)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q186X0_PEPD6 | Q186X0)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

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