4DS3 - JenaLib

Title :   CRYSTAL STRUCTURE OF PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE FROM BRUCELLA MELITENSIS

Authors :   Seattle Structural Genomics Center For Infectious Disease (S

Date :   17 Feb 12 (Deposition) - 04 Apr 12 (Release) - 04 Apr 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Phosphoribosylglycinamide Formyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. W. Fairman, A. S. Gardberg, B. L. Staker, L. Stewart, Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Brucella Melitensis
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:22 , PRO A:27 , LYS A:174 , HIS A:177 , ARG A:178 , HOH A:560	BINDING SITE FOR RESIDUE SO4 A 301
2	AC2	SOFTWARE	ARG A:61 , LYS A:67 , HOH A:491	BINDING SITE FOR RESIDUE SO4 A 302
3	AC3	SOFTWARE	ARG A:98 , PRO A:119 , GLY A:120 , ARG A:126 , HOH A:507 , HOH A:537	BINDING SITE FOR RESIDUE SO4 A 303
4	AC4	SOFTWARE	HIS A:122 , HIS A:124 , GLN A:125 , HOH A:504	BINDING SITE FOR RESIDUE CL A 304
5	AC5	SOFTWARE	GLY A:12 , GLY A:13 , GLY A:14 , SER A:15 , ASN A:16 , HOH A:406 , HOH A:423 , HOH A:428 , HOH A:509 , HOH A:543	BINDING SITE FOR RESIDUE GOL A 305

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:192
 aligned with Q8YGB8_BRUME | Q8YGB8 from UniProtKB/TrEMBL  Length:205

    Alignment length:204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201    
         Q8YGB8_BRUME     2 KRNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPILAQAAVPVLDGDTAETLAARVLKAEHRLYPLALQKFAAGEKASNQFSDGMVLSA 205
               SCOP domains d4ds3a_ A: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee...hhhhhhhhhhhh.....eeeeeeee.....hhhhhhhhh...eee.hhhhh.hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhh..eeeee..........hhhhhhhhh...eeeeeeee...--....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh----------...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ds3 A   2 KRNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTE--DEGPILAQAAVPVLDGDTAETLAARVLKAEHRLYPLALQKFAA----------GMVLSA 204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141  |  | 151       161       171       181       | -       200    
                                                                                                                                                                        144  |                                       189        199     
                                                                                                                                                                           147

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Asymmetric Unit(hide GO term definitions)

Chain A (Q8YGB8_BRUME | Q8YGB8)

molecular function
	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).
	GO:0004644	phosphoribosylglycinamide formyltransferase activity	Catalysis of the reaction: 10-formyltetrahydrofolate + N1-(5-phospho-D-ribosyl)glycinamide = tetrahydrofolate + N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006189	'de novo' IMP biosynthetic process	The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

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