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(-) Description

Title :  THREE DIMENSIONAL STRUCTURE OF DE NOVO DESIGNED SERINE HYDROLASE OSH26, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR89
 
Authors :  A. Kuzin, M. Su, S. Rajagopalan, J. Seetharaman, S. Sahdev, R. Xiao, C. Ciccosanti, D. Baker, J. K. Everett, T. B. Acton, G. T. Montelione, L J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  17 Feb 12  (Deposition) - 18 Apr 12  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Northeast Structural Genomics Consortium, Nesg, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rajagopalan, C. Wang, K. Yu, A. P. Kuzin, F. Richter, S. Lew, A. E. Miklos, M. L. Matthews, J. Seetharaman, M. Su, J. F. Hunt, B. F. Cravatt, D. Baker
Design Of Activated Serine-Containing Catalytic Triads With Atomic-Level Accuracy.
Nat. Chem. Biol. V. 10 386 2014
PubMed-ID: 24705591  |  Reference-DOI: 10.1038/NCHEMBIO.1498

(-) Compounds

Molecule 1 - DE NOVO DESIGNED SERINE HYDROLASE, OR89
    Chains: A
    Engineered: YES
    Organism Scientific: ARTIFICIAL GENE
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE13Mod. Amino AcidSELENOMETHIONINE
3NA1Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMSE A:59 , GLY A:62 , PHE A:64BINDING SITE FOR RESIDUE NA A 401
2AC2SOFTWAREASN A:5 , GLN A:57 , TYR A:137BINDING SITE FOR RESIDUE CL A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DRT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:212 -Ile A:213
2Ala A:322 -Pro A:323

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DRT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DRT)

(-) Exons   (0, 0)

(no "Exon" information available for 4DRT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeeee.....eeeee.......hhhhhhhhhhhhhhhhhhh.......eee.hhhhhh...............eeehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeee..hhhhhh...eeeeeeeeee...eeeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhheeeeeee......eeeeee.....eeeee....eeeeee..hhhhheeeeee....ee.......eeeeeeeee..eeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4drt A   4 LNIKTmIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPALLAHmmTSYVIGQAmKAGKFKETDLVTIGNDAWATGNKGASLmFLKPGmQVPVSQLIRGINLQDGADAAVAmADFAAGSQDAFVGLmNSYVNALGLKNTHFQTVSGGDADGQYSSARDmALIGQALIRDVPNEYSIFKEKEFTFNGIRQLNRNGLLWDNSLNVDGImTGHTDKAGYNLVASATEGQmRLISAVmGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRmKDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNF 358
                                 |  13        23        33        43     || 53     |  63        73       |86   |    96       106       116  |    126       136       146       156       166       176       186       196       206       216       226       236    |  246       256       266       276       286       296       306       316       326       336       346       356  
                                 9-MSE                                  49-MSE    59-MSE                81|    |     |                    119-MSE        134-MSE                         166-MSE                                         214-MSE             234-MSE  |                                                              306-MSE                                                
                                                                         50-MSE                          85    |     |                                                                                                                                              241-MSE                                                                                                                 
                                                                                                              90-MSE |                                                                                                                                                                                                                                                                      
                                                                                                                    96-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DRT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DRT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DRT)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4DRT)

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 Related Entries

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(-) Related Entries Specified in the PDB File

3mzf HOMOLOGY IS 96.67% RELATED ID: NESG-OR89 RELATED DB: TARGETTRACK