4DQ0 - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF TELLURITE RESISTANCE PROTEIN FROM ESCHERICHIA COLI O157:H7 STR. SAKAI

Authors :   K. Tan, C. Hatzos-Skintges, S. Clancy, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)

Date :   14 Feb 12 (Deposition) - 29 Feb 12 (Release) - 29 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Structural Genomics, Psi-Biology, Protein Structure Initiative, Mcsg, Midwest Center For Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, C. Hatzos-Skintges, S. Clancy, A. Joachimiak
The Crystal Structure Of Tellurite Resistance Protein From Escherichia Coli O157:H7 Str. Sakai
To Be Published
PubMed: search

Molecule 1 - TELLURITE RESISTANCE PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3) MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ECS2035, ESCHERICHIA COLI, TEHB, Z2288
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	386585

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 5)

No.	Name	Count	Type	Full Name
1	NHE	5	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	NHE	1	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	NHE	2	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	NHE	2	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	NHE	-1	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:93 , HOH A:378 , ILE B:2 , ARG B:4 , TYR B:8 , LYS B:12 , ILE B:74 , GLU B:75 , ASN B:76	BINDING SITE FOR RESIDUE NHE A 201
2	AC2	SOFTWARE	ARG A:43 , VAL A:103 , PHE A:107 , HIS B:176 , ARG B:177 , THR B:178 , ASP B:179 , NHE B:202	BINDING SITE FOR RESIDUE NHE B 201
3	AC3	SOFTWARE	LEU A:175 , ASN A:183 , HIS B:19 , ARG B:43 , MET B:106 , HIS B:176 , NHE B:201	BINDING SITE FOR RESIDUE NHE B 202
4	AC4	SOFTWARE	THR C:16 , ARG C:43 , HIS C:176 , NHE C:202 , LEU D:175 , ARG D:177 , ASN D:183 , ILE D:185	BINDING SITE FOR RESIDUE NHE C 201
5	AC5	SOFTWARE	LEU C:175 , HIS C:176 , ARG C:177 , THR C:178 , ASP C:179 , NHE C:201 , THR D:16 , HIS D:19 , ARG D:43	BINDING SITE FOR RESIDUE NHE C 202

(no "SS Bond" information available for 4DQ0)

(no "Cis Peptide Bond" information available for 4DQ0)

(no "SAP(SNP)/Variant" information available for 4DQ0)

(no "PROSITE Motif" information available for 4DQ0)

(no "Exon" information available for 4DQ0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:195
 aligned with Q8X9V6_ECO57 | Q8X9V6 from UniProtKB/TrEMBL  Length:197

    Alignment length:195
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192     
         Q8X9V6_ECO57     3 IRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
               SCOP domains d4dq0a_ A: automated matches                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh....hhhhhhhh......eeeee....hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeeee..................hhhhhhh...eeeeee..eeee.........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dq0 A   3 IRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Chain B from PDB  Type:PROTEIN  Length:198
 aligned with Q8X9V6_ECO57 | Q8X9V6 from UniProtKB/TrEMBL  Length:197

    Alignment length:198
                             1                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189        
         Q8X9V6_ECO57     - -MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
               SCOP domains d4dq0b_ B: automated matches                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhh.....hhhhhhhh......eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eeeee...........eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeeee..................hhhhhhh...eeeeee..eeee.........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dq0 B   0 AMIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189

Chain C from PDB  Type:PROTEIN  Length:198
 aligned with Q8X9V6_ECO57 | Q8X9V6 from UniProtKB/TrEMBL  Length:197

    Alignment length:198
                             1                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189        
         Q8X9V6_ECO57     - -MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
               SCOP domains d4dq0c_ C: automated matches                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhh....hhhhhhhh......eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eeeee...........eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeeee..................hhhhhhh...eeeeee..eeee.........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dq0 C   0 AMIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189

Chain D from PDB  Type:PROTEIN  Length:193
 aligned with Q8X9V6_ECO57 | Q8X9V6 from UniProtKB/TrEMBL  Length:197

    Alignment length:196
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191      
         Q8X9V6_ECO57     2 IIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
               SCOP domains d4dq0d_ D: automated matches                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh.....hhhhhhhh......eeeee....hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeeee..................hhhhhhh..eeeeeee..eeeeee.---.eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dq0 D   2 IIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNEDVGELHRT---GNRIKLRFATMLARKK 197
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171      |  -|      191      
                                                                                                                                                                                                          178 182

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: S-adenosyl-L-methionine-dependent methyltransferases (533)

Superfamily: S-adenosyl-L-methionine-dependent methyltransferases (533)

Family: TehB-like (5)

Protein domain: automated matches (4)

Escherichia coli [TaxId: 386585] (1)

d4dq0a_

Escherichia coli [TaxId: 562] (2)

2a	d4dq0b_	B:
2b	d4dq0c_	C:
2c	d4dq0d_	D:

(no "CATH Domain" information available for 4DQ0)

(no "Pfam Domain" information available for 4DQ0)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q8X9V6_ECO57 | Q8X9V6)

molecular function
	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
biological process
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0046690	response to tellurium ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tellurium ion stimulus.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Description

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Ligands, Modified Residues, Ions (1, 5)

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