4DO7 - JenaLib

Title :   CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE (COG3618) FROM BURKHOLDERIA MULTIVORANS (TARGET EFI-500235) WITH BOUND ZN, SPACE GROUP C2

Authors :   M. W. Vetting, R. Toro, R. Bhosle, S. R. Wasserman, L. L. Morisco, S. Soji R. D. Seidel, B. Hillerich, E. Washington, A. Scott Glenn, S. Chowdhu B. Evans, J. Hammonds, N. F. Al Obaidi, W. D. Zencheck, H. J. Imker, J. A F. M. Raushel, S. C. Almo, Enzyme Function Initiative (Efi)

Date :   09 Feb 12 (Deposition) - 29 Feb 12 (Release) - 29 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Amidohydrolase, Enzyme Function Initiative, Efi, Structural Genomics, Tim-Barrel Fold, Putative Lactonase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. W. Vetting, R. Toro, R. Bhosle, S. R. Wasserman, L. L. Morisco, S. Sojitra, R. D. Seidel, B. Hillerich, E. Washington, A. Scott Glenn S. Chowdhury, B. Evans, J. Hammonds, N. F. Al Obaidi, W. D. Zencheck, H. J. Imker, J. A. Gerlt, F. M. Raushel, S. C. Almo, Enzyme Function Initiative
Crystal Structure Of An Amidohydrolase (Cog3618) From Burkholderia Multivorans (Target Efi-500235) With Bound Zn, Space Group C2
To Be Published
PubMed: search

Compounds

Molecule 1 - AMIDOHYDROLASE 2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	BMUL_3602, BMULJ_04915
	Organism Scientific	:	BURKHOLDERIA MULTIVORANS
	Organism Taxid	:	395019
	Strain	:	ATCC 17616
	Synonym	:	PUTATIVE AMIDOHYDROLASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Asymmetric Unit (2, 3)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION
2	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:9 , HIS A:11 , HIS A:166 , ASP A:244 , HOH A:728	BINDING SITE FOR RESIDUE ZN A 401
2	AC2	SOFTWARE	ARG A:75 , HOH A:547 , ALA B:271 , ARG B:274 , HOH B:600 , HOH B:624	BINDING SITE FOR RESIDUE SO4 B 401
3	AC3	SOFTWARE	HIS B:9 , HIS B:11 , HIS B:166 , ASP B:244 , HOH B:502	BINDING SITE FOR RESIDUE ZN B 402

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:284
 aligned with A0A0H3KNC4_B | A0A0H3KNC4 from UniProtKB/TrEMBL  Length:296

    Alignment length:287
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       
         A0A0H3KNC4_B     3 ALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEARIAAVVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFERQLPDVQAFCARHDAHWLVLDHAGKPALAEFDRDDTALARWRAALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWAESRLSAAERSALWGGTAARCYALP 289
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhh......hhhhh...hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh....eeeeee.......hhhhhhh......eeeee.hhhhh.hhhhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhh....eee.hhhh.hhhhh.---.hhhhhhhhhhhhhh...eeeee..hhhhh......hhhhhhhhhhhhhhhhhhhh...eee....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4do7 A   3 ALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEARIAAVVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFERQLPDVQAFCARHDAHWLVLDHAGKPALAEFD---TALARWRAALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWAESRLSAAERSALWGGTAARCYALP 289
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   |   182       192       202       212       222       232       242       252       262       272       282       
                                                                                                                                                                                                       176 180

Chain B from PDB  Type:PROTEIN  Length:284
 aligned with A0A0H3KNC4_B | A0A0H3KNC4 from UniProtKB/TrEMBL  Length:296

    Alignment length:287
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       
         A0A0H3KNC4_B     3 ALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEARIAAVVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFERQLPDVQAFCARHDAHWLVLDHAGKPALAEFDRDDTALARWRAALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWAESRLSAAERSALWGGTAARCYALP 289
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhh......hhhhh...hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh....eeeeee.......hhhhhhhh.....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhh....eee.hhhh.hhhhh.---.hhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhh...eee....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4do7 B   3 ALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEARIAAVVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFERQLPDVQAFCARHDAHWLVLDHAGKPALAEFD---TALARWRAALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWAESRLSAAERSALWGGTAARCYALP 289
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   |   182       192       202       212       222       232       242       252       262       272       282       
                                                                                                                                                                                                       176 180

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Description