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(-) Description

Title :  CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE (COG3618) FROM BURKHOLDERIA MULTIVORANS (TARGET EFI-500235) WITH BOUND ZN, SPACE GROUP C2
 
Authors :  M. W. Vetting, R. Toro, R. Bhosle, S. R. Wasserman, L. L. Morisco, S. Soji R. D. Seidel, B. Hillerich, E. Washington, A. Scott Glenn, S. Chowdhu B. Evans, J. Hammonds, N. F. Al Obaidi, W. D. Zencheck, H. J. Imker, J. A F. M. Raushel, S. C. Almo, Enzyme Function Initiative (Efi)
Date :  09 Feb 12  (Deposition) - 29 Feb 12  (Release) - 29 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Amidohydrolase, Enzyme Function Initiative, Efi, Structural Genomics, Tim-Barrel Fold, Putative Lactonase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, R. Toro, R. Bhosle, S. R. Wasserman, L. L. Morisco, S. Sojitra, R. D. Seidel, B. Hillerich, E. Washington, A. Scott Glenn S. Chowdhury, B. Evans, J. Hammonds, N. F. Al Obaidi, W. D. Zencheck, H. J. Imker, J. A. Gerlt, F. M. Raushel, S. C. Almo, Enzyme Function Initiative
Crystal Structure Of An Amidohydrolase (Cog3618) From Burkholderia Multivorans (Target Efi-500235) With Bound Zn, Space Group C2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMIDOHYDROLASE 2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BMUL_3602, BMULJ_04915
    Organism Scientific: BURKHOLDERIA MULTIVORANS
    Organism Taxid: 395019
    Strain: ATCC 17616
    Synonym: PUTATIVE AMIDOHYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2ZN-1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:9 , HIS A:11 , HIS A:166 , ASP A:244 , HOH A:728BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREARG A:75 , HOH A:547 , ALA B:271 , ARG B:274 , HOH B:600 , HOH B:624BINDING SITE FOR RESIDUE SO4 B 401
3AC3SOFTWAREHIS B:9 , HIS B:11 , HIS B:166 , ASP B:244 , HOH B:502BINDING SITE FOR RESIDUE ZN B 402

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:71 -A:71
2B:71 -B:71

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Trp A:245 -Pro A:246
2Trp B:245 -Pro B:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DO7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DO7)

(-) Exons   (0, 0)

(no "Exon" information available for 4DO7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:284
 aligned with A0A0H3KNC4_B | A0A0H3KNC4 from UniProtKB/TrEMBL  Length:296

    Alignment length:287
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       
         A0A0H3KNC4_B     3 ALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEARIAAVVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFERQLPDVQAFCARHDAHWLVLDHAGKPALAEFDRDDTALARWRAALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWAESRLSAAERSALWGGTAARCYALP 289
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhh......hhhhh...hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh....eeeeee.......hhhhhhh......eeeee.hhhhh.hhhhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhh....eee.hhhh.hhhhh.---.hhhhhhhhhhhhhh...eeeee..hhhhh......hhhhhhhhhhhhhhhhhhhh...eee....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4do7 A   3 ALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEARIAAVVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFERQLPDVQAFCARHDAHWLVLDHAGKPALAEFD---TALARWRAALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWAESRLSAAERSALWGGTAARCYALP 289
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   |   182       192       202       212       222       232       242       252       262       272       282       
                                                                                                                                                                                                       176 180                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:284
 aligned with A0A0H3KNC4_B | A0A0H3KNC4 from UniProtKB/TrEMBL  Length:296

    Alignment length:287
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       
         A0A0H3KNC4_B     3 ALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEARIAAVVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFERQLPDVQAFCARHDAHWLVLDHAGKPALAEFDRDDTALARWRAALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWAESRLSAAERSALWGGTAARCYALP 289
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhh......hhhhh...hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh....eeeeee.......hhhhhhhh.....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhh....eee.hhhh.hhhhh.---.hhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhh...eee....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4do7 B   3 ALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEARIAAVVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFERQLPDVQAFCARHDAHWLVLDHAGKPALAEFD---TALARWRAALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWAESRLSAAERSALWGGTAARCYALP 289
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   |   182       192       202       212       222       232       242       252       262       272       282       
                                                                                                                                                                                                       176 180
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DO7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DO7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DO7)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4DO7)

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