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(-) Description

Title :  THE STRUCTURE OF THE ATP SULFURYLASE FROM ALLOCHROMATIUM VINOSUM IN THE OPEN STATE
 
Authors :  K. Parey, U. Demmer, E. Warkentin, C. Dahl, U. Ermler
Date :  09 Feb 12  (Deposition) - 13 Feb 13  (Release) - 13 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rossmann-Like Fold, Adenylsulfurylase/Atp:Sulfate Adenylyltransferase, Atp And Aps, Respectively, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Parey, U. Demmer, E. Warkentin, C. Dahl, U. Ermler
The Crystal Structure Of The Atp Sulfurylase From Allochromatium Vinosum In The Open State
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SULFATE ADENYLYLTRANSFERASE
    Chains: A, B
    EC Number: 2.7.7.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ALVIN_1118, SAT
    Organism Scientific: ALLOCHROMATIUM VINOSUM
    Organism Taxid: 572477
    Strain: DSM 180
    Synonym: ATP-SULFURYLASE, SULFATE ADENYLATE TRANSFERASE, SAT

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:12 , ARG A:13 , PHE A:14 , VAL A:15 , TYR A:16 , ASP A:17BINDING SITE FOR RESIDUE MES A 401
2AC2SOFTWAREPRO B:12 , ARG B:13 , PHE B:14 , VAL B:15 , TYR B:16 , ASP B:17 , GLN B:162BINDING SITE FOR RESIDUE MES B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DNX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DNX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DNX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DNX)

(-) Exons   (0, 0)

(no "Exon" information available for 4DNX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:396
 aligned with SAT_ALLVD | O66036 from UniProtKB/Swiss-Prot  Length:397

    Alignment length:396
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390      
            SAT_ALLVD     1 MIKPVGSDELRPRFVYDPEQHHRLSSEAESLPSVIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQSMTLTDGRFFPVPLLCLLESADAIAGATRIALRDPNVEGNPVLAVMDVTAVEQVSDAQMALMTEQVYGTSDPKHPGVETFNSQGRTAISGPIQVLNFSYFQTDFPDTFRTAVEIRHEIQERGWQKIVAFQTRNPMHRAHEELCKMAMEAVEADGVVIHMLLGQLKPGDIPAPVRDAAIRTMAELYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGPFDAQTIFDDAVPTDVLAIEIFRADNTAYSKKLGRVVMMRDAPDHTPDDFIQLSGTRVREMLGQGEAPPPEFSRPEVAQILMDYYRSLPQ 396
               SCOP domains d4dnxa1 A:1-173 automated matches                                                                                                                                            d4dnxa2 A:174-396 automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhh...eee.hhhhhhhhhhhhh.......ee.hhhhhhhhhhhh..............ee..hhhhh...eeeee........eeeeee..eeee.hhhhhhhhhhhhhh.....hhhhhhhh....eeeeeeeee..hhhhhhhh.....hhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh..eeeeeeee........hhhhhhhhhhhhhhhhh....eeeeeee......hhhhhhhhhhhhhhhh..eeee.............hhhhhhhhhh........eeee...eeee....eeee.hhh...hhh.ee..hhhhhhhhhhh.........hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dnx A   1 MIKPVGSDELRPRFVYDPEQHHRLSSEAESLPSVIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQSMTLTDGRFFPVPLLCLLESADAIAGATRIALRDPNVEGNPVLAVMDVTAVEQVSDAQMALMTEQVYGTSDPKHPGVETFNSQGRTAISGPIQVLNFSYFQTDFPDTFRTAVEIRHEIQERGWQKIVAFQTRNPMHRAHEELCKMAMEAVEADGVVIHMLLGQLKPGDIPAPVRDAAIRTMAELYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGPFDAQTIFDDAVPTDVLAIEIFRADNTAYSKKLGRVVMMRDAPDHTPDDFIQLSGTRVREMLGQGEAPPPEFSRPEVAQILMDYYRSLPQ 396
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390      


Chain B from PDB  Type:PROTEIN  Length:396
 aligned with SAT_ALLVD | O66036 from UniProtKB/Swiss-Prot  Length:397

    Alignment length:396
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390      
            SAT_ALLVD     1 MIKPVGSDELRPRFVYDPEQHHRLSSEAESLPSVIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQSMTLTDGRFFPVPLLCLLESADAIAGATRIALRDPNVEGNPVLAVMDVTAVEQVSDAQMALMTEQVYGTSDPKHPGVETFNSQGRTAISGPIQVLNFSYFQTDFPDTFRTAVEIRHEIQERGWQKIVAFQTRNPMHRAHEELCKMAMEAVEADGVVIHMLLGQLKPGDIPAPVRDAAIRTMAELYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGPFDAQTIFDDAVPTDVLAIEIFRADNTAYSKKLGRVVMMRDAPDHTPDDFIQLSGTRVREMLGQGEAPPPEFSRPEVAQILMDYYRSLPQ 396
               SCOP domains d4dnxb1 B:1-173 automated matches                                                                                                                                            d4dnxb2 B:174-396 automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhh...eee.hhhhhhhhhhhhh.......ee.hhhhhhhhhhhh..............ee..hhhhh...eeeee........eeeeee..eeee.hhhhhhhhhhhhhh.....hhhhhhhh....eeeeeeeee..hhhhhhhh.....hhhhhhhhhhhhh...eeee......hhhhhhhhhhhhhhhh..eeeeeeee........hhhhhhhhhhhhhhhhh....eeeeeee......hhhhhhhhhhhhhhhh..eeee.............hhhhhhhhhh........eeee...eeee....eeee.hhh...hhh.ee..hhhhhhhhhh..........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dnx B   1 MIKPVGSDELRPRFVYDPEQHHRLSSEAESLPSVIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQSMTLTDGRFFPVPLLCLLESADAIAGATRIALRDPNVEGNPVLAVMDVTAVEQVSDAQMALMTEQVYGTSDPKHPGVETFNSQGRTAISGPIQVLNFSYFQTDFPDTFRTAVEIRHEIQERGWQKIVAFQTRNPMHRAHEELCKMAMEAVEADGVVIHMLLGQLKPGDIPAPVRDAAIRTMAELYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGPFDAQTIFDDAVPTDVLAIEIFRADNTAYSKKLGRVVMMRDAPDHTPDDFIQLSGTRVREMLGQGEAPPPEFSRPEVAQILMDYYRSLPQ 396
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DNX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DNX)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (SAT_ALLVD | O66036)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0004781    sulfate adenylyltransferase (ATP) activity    Catalysis of the reaction: ATP + sulfate = diphosphate + adenylylsulfate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0070814    hydrogen sulfide biosynthetic process    The chemical reactions and pathways resulting in the formation of hydrogen sulfide, H2S.
    GO:0000103    sulfate assimilation    The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.

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